Wall clock time and date at job start Mon Mar 30 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47132 * 270.00039 * 3 2 1 5 5 H 1.48500 * 109.47104 * 29.99784 * 3 2 1 6 6 H 1.48502 * 109.46812 * 149.99888 * 3 2 1 7 7 C 1.37876 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99805 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00054 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47193 * 179.97438 * 9 7 2 11 11 N 1.28803 * 124.75166 * 90.00222 * 10 9 7 12 12 C 1.32526 * 117.12183 * 180.02562 * 11 10 9 13 13 C 1.48348 * 122.96227 * 179.97438 * 12 11 10 14 14 C 1.39795 * 120.53724 * 0.02951 * 13 12 11 15 15 C 1.38410 * 118.30740 * 180.02562 * 14 13 12 16 16 C 1.38321 * 119.28517 * 0.02562 * 15 14 13 17 17 N 1.31889 * 121.03780 * 359.97438 * 16 15 14 18 18 C 1.31742 * 121.85128 * 359.97438 * 17 16 15 19 19 C 1.34831 * 114.07438 * 0.27301 * 12 11 10 20 20 S 1.70915 * 124.75934 * 270.02360 * 10 9 7 21 21 H 0.97008 * 119.99591 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47000 * 60.00324 * 9 7 2 23 23 H 1.08997 * 109.47648 * 300.00507 * 9 7 2 24 24 H 1.07991 * 120.84467 * 359.74633 * 14 13 12 25 25 H 1.07998 * 120.35450 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.47660 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.70047 * 180.02562 * 18 17 16 28 28 H 1.07998 * 126.06346 * 179.69570 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 7 4.2581 -3.3073 -1.0592 12 6 4.6955 -4.5459 -0.8832 13 6 5.0162 -5.4564 -2.0096 14 6 4.8656 -5.0302 -3.3324 15 6 5.1777 -5.9178 -4.3475 16 6 5.6240 -7.1863 -4.0237 17 7 5.7561 -7.5602 -2.7658 18 6 5.4724 -6.7502 -1.7663 19 6 4.8172 -4.9076 0.4100 20 16 4.3385 -3.5335 1.4032 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6800 -0.8910 24 1 4.5104 -4.0353 -3.5566 25 1 5.0731 -5.6233 -5.3813 26 1 5.8680 -7.8816 -4.8133 27 1 5.5938 -7.0924 -0.7491 28 1 5.1506 -5.8687 0.7727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259321925.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:41 Heat of formation + Delta-G solvation = 72.462140 kcal Electronic energy + Delta-G solvation = -14260.413776 eV Core-core repulsion = 11788.962783 eV Total energy + Delta-G solvation = -2471.450992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30424 -38.85289 -33.78238 -32.55293 -32.02056 -30.36447 -28.12314 -25.13708 -23.62885 -23.17216 -21.24169 -19.23978 -17.65088 -17.00300 -16.97469 -15.90684 -15.30199 -14.68843 -14.45215 -14.14544 -13.53800 -13.39469 -13.06776 -12.92818 -12.32077 -12.07814 -11.74175 -11.02578 -10.90964 -10.69329 -10.30693 -9.89238 -9.61104 -9.54995 -9.36004 -9.07397 -8.89929 -8.70318 -7.89362 -6.19925 -4.22062 0.65323 1.26558 1.56004 1.83784 2.24712 3.21627 3.27012 3.29237 3.29537 4.00949 4.26757 4.29615 4.48826 4.86554 4.99611 5.05817 5.12293 5.22056 5.42133 5.61912 5.75684 5.83220 6.13928 6.32708 6.45931 6.66126 6.75216 6.86083 7.44120 7.90936 8.26015 8.31885 8.81433 9.36654 10.92494 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.005646 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.473390 B = 4958.435936 C = 5473.921412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.076 0.924 9 C 0.051 3.949 10 C 0.129 3.871 11 N -0.485 5.485 12 C 0.108 3.892 13 C -0.057 4.057 14 C -0.045 4.045 15 C -0.173 4.173 16 C 0.091 3.909 17 N -0.486 5.486 18 C 0.109 3.891 19 C -0.281 4.281 20 S 0.117 5.883 21 H 0.267 0.733 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.147 0.853 25 H 0.136 0.864 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 -9.595 -2.823 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.094 0.906 9 C 0.010 3.990 10 C -0.150 4.150 11 N -0.198 5.198 12 C -0.025 4.025 13 C -0.062 4.062 14 C -0.072 4.072 15 C -0.193 4.193 16 C -0.066 4.066 17 N -0.194 5.194 18 C -0.049 4.049 19 C -0.421 4.421 20 S 0.375 5.625 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.164 0.836 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.173 0.827 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.461 -9.855 -2.024 15.250 hybrid contribution 0.072 1.138 -0.918 1.464 sum 11.533 -8.717 -2.942 14.754 Atomic orbital electron populations 1.69878 1.06231 1.27289 1.49528 1.24906 0.94782 0.98946 0.94083 0.86826 0.80365 0.83561 0.78948 1.19822 1.20901 1.18807 1.20726 0.87142 0.95142 1.52782 0.90614 1.18596 0.98061 0.83453 0.98882 1.27536 0.95990 1.02436 0.89054 1.66194 1.16746 1.05002 1.31871 1.18566 1.01633 0.91107 0.91149 1.19167 1.00760 0.93895 0.92328 1.21836 0.93610 1.00495 0.91272 1.22137 1.01491 0.95108 1.00567 1.22771 0.95616 0.94674 0.93579 1.67656 1.15532 1.35969 1.00232 1.22754 0.94660 0.88955 0.98558 1.26811 1.14439 1.04687 0.96127 1.83924 1.59863 1.04649 1.14084 0.92269 0.93897 0.93245 0.83569 0.84574 0.82836 0.82711 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 15 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 15 3 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 6 H -0.26 -5.76 6.54 56.52 0.37 -5.39 15 7 C -0.52 -14.29 9.65 -34.44 -0.33 -14.63 15 8 H 0.08 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.05 1.18 4.62 -29.04 -0.13 1.04 15 10 C 0.13 2.72 6.55 -13.55 -0.09 2.63 15 11 N -0.48 -10.06 10.00 -8.43 -0.08 -10.15 15 12 C 0.11 1.91 6.65 -84.61 -0.56 1.35 15 13 C -0.06 -0.88 5.89 -104.75 -0.62 -1.50 15 14 C -0.05 -0.66 9.76 -38.94 -0.38 -1.04 15 15 C -0.17 -2.01 10.10 -39.49 -0.40 -2.41 15 16 C 0.09 1.04 11.17 -17.50 -0.20 0.85 15 17 N -0.49 -6.57 10.35 -12.96 -0.13 -6.71 15 18 C 0.11 1.49 10.66 -17.18 -0.18 1.31 15 19 C -0.28 -4.36 10.64 29.52 0.31 -4.05 15 20 S 0.12 2.00 23.16 -107.50 -2.49 -0.49 15 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 22 H 0.04 0.94 7.20 -51.93 -0.37 0.57 15 23 H 0.05 1.14 7.57 -51.93 -0.39 0.75 15 24 H 0.15 2.23 7.79 -52.49 -0.41 1.82 15 25 H 0.14 1.18 8.06 -52.49 -0.42 0.76 15 26 H 0.15 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.16 1.73 6.69 -52.49 -0.35 1.38 15 28 H 0.17 2.01 6.92 -52.49 -0.36 1.64 15 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -30.90 265.43 -7.60 -38.50 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.32 Total: -0.70 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.68 Total: -14.43 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.56 Total: -42.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.49 Total: -0.49 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.90 -7.60 -38.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259321925.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.959 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds