Wall clock time and date at job start Mon Mar 30 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47132 * 270.00039 * 3 2 1 5 5 H 1.48500 * 109.47104 * 29.99784 * 3 2 1 6 6 H 1.48502 * 109.46812 * 149.99888 * 3 2 1 7 7 C 1.37876 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99805 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00054 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47193 * 179.97438 * 9 7 2 11 11 N 1.28803 * 124.75166 * 90.00222 * 10 9 7 12 12 C 1.32526 * 117.12183 * 180.02562 * 11 10 9 13 13 C 1.48348 * 122.96227 * 179.97438 * 12 11 10 14 14 C 1.39795 * 120.53724 * 0.02951 * 13 12 11 15 15 C 1.38410 * 118.30740 * 180.02562 * 14 13 12 16 16 C 1.38321 * 119.28517 * 0.02562 * 15 14 13 17 17 N 1.31889 * 121.03780 * 359.97438 * 16 15 14 18 18 C 1.31742 * 121.85128 * 359.97438 * 17 16 15 19 19 C 1.34831 * 114.07438 * 0.27301 * 12 11 10 20 20 S 1.70915 * 124.75934 * 270.02360 * 10 9 7 21 21 H 0.97008 * 119.99591 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47000 * 60.00324 * 9 7 2 23 23 H 1.08997 * 109.47648 * 300.00507 * 9 7 2 24 24 H 1.07991 * 120.84467 * 359.74633 * 14 13 12 25 25 H 1.07998 * 120.35450 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.47660 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.70047 * 180.02562 * 18 17 16 28 28 H 1.07998 * 126.06346 * 179.69570 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 7 4.2581 -3.3073 -1.0592 12 6 4.6955 -4.5459 -0.8832 13 6 5.0162 -5.4564 -2.0096 14 6 4.8656 -5.0302 -3.3324 15 6 5.1777 -5.9178 -4.3475 16 6 5.6240 -7.1863 -4.0237 17 7 5.7561 -7.5602 -2.7658 18 6 5.4724 -6.7502 -1.7663 19 6 4.8172 -4.9076 0.4100 20 16 4.3385 -3.5335 1.4032 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6800 -0.8910 24 1 4.5104 -4.0353 -3.5566 25 1 5.0731 -5.6233 -5.3813 26 1 5.8680 -7.8816 -4.8133 27 1 5.5938 -7.0924 -0.7491 28 1 5.1506 -5.8687 0.7727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259321925.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:41 Heat of formation + Delta-G solvation = 52.195204 kcal Electronic energy + Delta-G solvation = -14261.292616 eV Core-core repulsion = 11788.962783 eV Total energy + Delta-G solvation = -2472.329833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43415 -40.13644 -35.60251 -34.00107 -33.17037 -31.91781 -29.55508 -26.63045 -25.06517 -24.26950 -22.73551 -20.63866 -19.09961 -18.94276 -18.04003 -17.04188 -16.44742 -16.39590 -15.81088 -15.53390 -14.89843 -14.64645 -14.61625 -14.13256 -14.01727 -13.47593 -13.17288 -12.72439 -12.48283 -12.26970 -12.00427 -11.73747 -11.06733 -10.84738 -10.60592 -10.48815 -10.44196 -10.32497 -9.16859 -8.34377 -6.42615 -0.51087 0.21242 0.29786 0.47371 0.83877 1.38238 1.39360 1.50413 1.95241 2.32537 2.93832 2.97412 3.08207 3.50846 3.89877 3.94268 4.00241 4.09167 4.33202 4.40596 4.62686 4.73556 4.83202 4.95068 5.08731 5.26139 5.30653 5.42264 5.69730 6.13688 6.60310 6.85238 6.93060 7.20373 8.81949 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.005646 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.473390 B = 4958.435936 C = 5473.921412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.237 1.237 7 C -0.525 4.525 8 H 0.026 0.974 9 C 0.057 3.943 10 C 0.077 3.923 11 N -0.506 5.506 12 C 0.083 3.917 13 C -0.081 4.081 14 C -0.067 4.067 15 C -0.165 4.165 16 C 0.096 3.904 17 N -0.500 5.500 18 C 0.112 3.888 19 C -0.259 4.259 20 S 0.157 5.843 21 H 0.271 0.729 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.127 0.873 25 H 0.167 0.833 26 H 0.192 0.808 27 H 0.178 0.822 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.730 -10.625 -2.924 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.160 1.160 7 C -0.564 4.564 8 H 0.045 0.955 9 C 0.016 3.984 10 C -0.201 4.201 11 N -0.221 5.221 12 C -0.048 4.048 13 C -0.086 4.086 14 C -0.094 4.094 15 C -0.184 4.184 16 C -0.060 4.060 17 N -0.208 5.208 18 C -0.046 4.046 19 C -0.398 4.398 20 S 0.414 5.586 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.145 0.855 25 H 0.184 0.816 26 H 0.209 0.791 27 H 0.195 0.805 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 13.724 -10.901 -2.128 17.655 hybrid contribution -0.637 1.247 -0.947 1.690 sum 13.087 -9.654 -3.075 16.550 Atomic orbital electron populations 1.70038 1.08360 1.28605 1.51252 1.25911 0.95633 1.03328 0.93422 0.85679 0.79868 0.77867 0.79469 1.19236 1.20408 1.15991 1.20895 0.89761 0.93354 1.52391 0.95532 1.18351 0.94926 0.85756 0.99320 1.27158 0.99140 1.02504 0.91313 1.66126 1.16551 1.06538 1.32846 1.18912 1.02442 0.90552 0.92888 1.19252 1.02753 0.94601 0.92007 1.21887 0.94763 1.00541 0.92183 1.22434 1.00107 0.94596 1.01311 1.23421 0.93735 0.95043 0.93843 1.67758 1.16005 1.36014 1.01015 1.23029 0.93814 0.87982 0.99806 1.27327 1.11876 1.05530 0.95048 1.83619 1.58718 1.04281 1.11940 0.92027 0.92324 0.93504 0.85459 0.81585 0.79123 0.80510 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.96 21.45 0.30 -57.85 15 2 C 0.02 0.88 5.47 84.65 0.46 1.34 15 3 Si 0.95 42.21 27.47 68.60 1.88 44.10 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 6 H -0.24 -9.44 6.54 99.48 0.65 -8.79 15 7 C -0.52 -30.06 9.65 25.60 0.25 -29.82 15 8 H 0.03 1.72 7.98 -2.91 -0.02 1.70 15 9 C 0.06 2.68 4.62 29.10 0.13 2.81 15 10 C 0.08 3.30 6.55 88.55 0.58 3.88 15 11 N -0.51 -21.44 10.00 -180.57 -1.80 -23.24 15 12 C 0.08 2.91 6.65 40.95 0.27 3.19 15 13 C -0.08 -2.46 5.89 -19.95 -0.12 -2.58 15 14 C -0.07 -1.93 9.76 22.69 0.22 -1.71 15 15 C -0.17 -3.49 10.10 22.33 0.23 -3.26 15 16 C 0.10 1.92 11.17 84.70 0.95 2.86 15 17 N -0.50 -12.14 10.35 -194.93 -2.02 -14.16 15 18 C 0.11 2.80 10.66 84.97 0.91 3.70 15 19 C -0.26 -7.51 10.64 67.04 0.71 -6.79 15 20 S 0.16 5.23 23.16 -56.49 -1.31 3.92 15 21 H 0.27 15.44 8.31 -92.70 -0.77 14.67 15 22 H 0.06 2.52 7.20 -2.38 -0.02 2.51 15 23 H 0.05 2.18 7.57 -2.39 -0.02 2.16 15 24 H 0.13 4.07 7.79 -2.92 -0.02 4.05 15 25 H 0.17 2.41 8.06 -2.91 -0.02 2.38 15 26 H 0.19 2.28 8.06 -2.91 -0.02 2.25 15 27 H 0.18 3.39 6.69 -2.91 -0.02 3.37 15 28 H 0.21 4.15 6.92 -2.91 -0.02 4.13 15 Total: -1.00 -70.23 265.43 2.77 -67.46 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.13 Total: 6.16 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.59 Total: -26.38 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -3.52 Total: -95.26 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.31 Total: 3.92 kcal Total: -70.23 2.77 -67.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259321925.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.655 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds