Wall clock time and date at job start Mon Mar 30 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47167 * 299.99971 * 3 2 1 6 6 H 1.48500 * 109.47317 * 60.00053 * 3 2 1 7 7 C 1.40213 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.40132 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.39853 * 127.86619 * 179.97438 * 9 7 2 11 11 C 1.36522 * 113.97928 * 180.02562 * 10 9 7 12 12 C 1.50701 * 120.65100 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47064 * 124.99769 * 12 11 10 14 14 C 1.38650 * 120.78792 * 269.71450 * 13 12 11 15 15 C 1.38207 * 119.16129 * 179.79528 * 14 13 12 16 16 N 1.31868 * 120.76474 * 0.49389 * 15 14 13 17 17 C 1.31874 * 121.72157 * 359.73831 * 16 15 14 18 18 C 1.38199 * 120.77057 * 0.02562 * 17 16 15 19 19 N 1.30432 * 118.69248 * 0.24744 * 11 10 9 20 20 S 1.69674 * 107.82176 * 359.63376 * 19 11 10 21 21 H 0.97000 * 119.99898 * 0.02562 * 1 2 3 22 22 H 1.07994 * 123.01239 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47060 * 244.99733 * 12 11 10 24 24 H 1.09001 * 109.47380 * 4.99821 * 12 11 10 25 25 H 1.07998 * 120.42060 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.61581 * 180.20726 * 15 14 13 27 27 H 1.07998 * 119.61429 * 180.02562 * 17 16 15 28 28 H 1.07991 * 120.42226 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0084 -1.2143 0.0005 8 1 3.0884 -1.2144 0.0001 9 6 1.3077 -2.4279 0.0016 10 6 1.8346 -3.7234 0.0018 11 6 0.8882 -4.7073 0.0024 12 6 1.2899 -6.1597 0.0021 13 6 0.6392 -6.8612 1.1664 14 6 1.2762 -6.9365 2.3956 15 6 0.6467 -7.5842 3.4418 16 7 -0.5404 -8.1345 3.2779 17 6 -1.1734 -8.0864 2.1220 18 6 -0.6082 -7.4516 1.0323 19 7 -0.3706 -4.3654 -0.0022 20 16 -0.4483 -2.6704 0.0024 21 1 -0.4850 0.8401 -0.0004 22 1 2.8951 -3.9272 0.0015 23 1 0.9675 -6.6257 -0.9291 24 1 2.3735 -6.2371 0.0909 25 1 2.2503 -6.4914 2.5349 26 1 1.1348 -7.6443 4.4033 27 1 -2.1448 -8.5483 2.0259 28 1 -1.1313 -7.4159 0.0882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259331723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:08 Heat of formation + Delta-G solvation = 38.139580 kcal Electronic energy + Delta-G solvation = -14399.861631 eV Core-core repulsion = 11926.922301 eV Total energy + Delta-G solvation = -2472.939330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78752 -37.03405 -34.45430 -33.04891 -30.84270 -29.89964 -27.81536 -26.02085 -23.07777 -22.53205 -20.74975 -18.29567 -17.66397 -16.24697 -15.98177 -15.32374 -15.25577 -15.13217 -13.93779 -13.44515 -13.37537 -12.96959 -12.59123 -12.21844 -11.97719 -11.82413 -11.40505 -11.33987 -10.98472 -10.89565 -10.47347 -9.87270 -9.22375 -9.17615 -9.03772 -8.78972 -8.52970 -8.03892 -7.16976 -6.90153 -4.87821 1.50301 1.64847 2.45654 2.84084 2.91466 2.99069 3.51861 3.57529 3.89328 3.95969 4.22264 4.75688 4.80708 5.09583 5.21480 5.50391 5.53761 5.82429 5.95029 6.04265 6.17309 6.30415 6.38381 6.65021 6.79599 7.02838 7.07006 7.28412 7.47363 7.81373 8.19596 8.28022 8.28084 8.61773 9.65805 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043804 B = 0.005434 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.054043 B = 5151.829507 C = 5279.519004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.053 3.947 3 Si 0.937 3.063 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.368 4.368 8 H 0.099 0.901 9 C 0.051 3.949 10 C -0.408 4.408 11 C 0.148 3.852 12 C -0.012 4.012 13 C -0.010 4.010 14 C -0.169 4.169 15 C 0.090 3.910 16 N -0.498 5.498 17 C 0.089 3.911 18 C -0.150 4.150 19 N -0.598 5.598 20 S 0.161 5.839 21 H 0.299 0.701 22 H 0.113 0.887 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -4.935 1.209 5.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.406 4.406 8 H 0.117 0.883 9 C -0.075 4.075 10 C -0.442 4.442 11 C -0.021 4.021 12 C -0.054 4.054 13 C -0.019 4.019 14 C -0.189 4.189 15 C -0.067 4.067 16 N -0.208 5.208 17 C -0.067 4.067 18 C -0.170 4.170 19 N -0.422 5.422 20 S 0.311 5.689 21 H 0.111 0.889 22 H 0.131 0.869 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.149 0.851 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.079 -5.119 1.904 5.462 hybrid contribution 2.553 0.994 -0.729 2.835 sum 2.474 -4.125 1.175 4.952 Atomic orbital electron populations 1.69155 1.07830 1.31158 1.30464 1.26337 0.95216 1.02904 0.92687 0.85749 0.80515 0.78678 0.79109 1.17849 1.19205 1.19201 1.19221 0.95476 0.88358 1.37521 0.88317 1.22986 0.95980 0.95439 0.93141 1.20527 0.98715 0.90744 1.34228 1.19973 0.90239 0.93999 0.97854 1.19321 0.99450 0.91297 0.95358 1.20220 0.93985 0.92469 0.95252 1.22040 1.01970 1.01149 0.93708 1.22597 0.91309 0.94286 0.98515 1.67589 1.09164 1.18933 1.25085 1.22622 0.99096 0.96673 0.88318 1.21989 0.95674 0.98540 1.00757 1.76283 1.19621 1.08839 1.37459 1.85053 1.07636 0.99996 1.76224 0.88864 0.86858 0.90256 0.90048 0.85060 0.83311 0.83329 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.08 10.96 55.56 0.61 -17.47 15 2 C 0.05 1.21 5.50 -17.28 -0.10 1.11 15 3 Si 0.94 16.70 29.56 -169.99 -5.03 11.67 15 4 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 6 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 7 C -0.37 -9.05 9.40 -38.13 -0.36 -9.41 15 8 H 0.10 2.26 7.85 -52.49 -0.41 1.85 15 9 C 0.05 1.35 6.41 -38.27 -0.25 1.10 15 10 C -0.41 -10.04 9.96 -39.60 -0.39 -10.44 15 11 C 0.15 3.47 6.01 -83.80 -0.50 2.97 15 12 C -0.01 -0.22 5.82 -29.03 -0.17 -0.39 15 13 C -0.01 -0.19 4.98 -104.32 -0.52 -0.71 15 14 C -0.17 -2.75 9.82 -39.44 -0.39 -3.14 15 15 C 0.09 1.39 11.18 -17.55 -0.20 1.20 15 16 N -0.50 -8.36 10.36 -13.25 -0.14 -8.49 15 17 C 0.09 1.42 11.18 -17.55 -0.20 1.22 15 18 C -0.15 -2.52 9.82 -39.44 -0.39 -2.90 15 19 N -0.60 -15.28 11.78 32.47 0.38 -14.90 15 20 S 0.16 4.26 21.28 -107.50 -2.29 1.98 15 21 H 0.30 6.30 8.29 -40.82 -0.34 5.97 15 22 H 0.11 2.56 8.05 -52.49 -0.42 2.14 15 23 H 0.08 1.35 8.10 -51.93 -0.42 0.92 15 24 H 0.08 1.31 7.93 -51.93 -0.41 0.90 15 25 H 0.13 1.91 8.06 -52.49 -0.42 1.49 15 26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 15 27 H 0.15 1.90 8.06 -52.49 -0.42 1.48 15 28 H 0.13 2.10 8.06 -52.49 -0.42 1.67 15 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -28.99 267.81 -8.37 -37.36 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -2.49 Total: 5.22 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.45 Total: -19.39 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.85 Total: -40.86 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -2.29 Total: 1.98 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.99 -8.37 -37.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259331723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.495 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds