Wall clock time and date at job start Mon Mar 30 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47167 * 299.99971 * 3 2 1 6 6 H 1.48500 * 109.47317 * 60.00053 * 3 2 1 7 7 C 1.40213 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.40132 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.39853 * 127.86619 * 179.97438 * 9 7 2 11 11 C 1.36522 * 113.97928 * 180.02562 * 10 9 7 12 12 C 1.50701 * 120.65100 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47064 * 124.99769 * 12 11 10 14 14 C 1.38650 * 120.78792 * 269.71450 * 13 12 11 15 15 C 1.38207 * 119.16129 * 179.79528 * 14 13 12 16 16 N 1.31868 * 120.76474 * 0.49389 * 15 14 13 17 17 C 1.31874 * 121.72157 * 359.73831 * 16 15 14 18 18 C 1.38199 * 120.77057 * 0.02562 * 17 16 15 19 19 N 1.30432 * 118.69248 * 0.24744 * 11 10 9 20 20 S 1.69674 * 107.82176 * 359.63376 * 19 11 10 21 21 H 0.97000 * 119.99898 * 0.02562 * 1 2 3 22 22 H 1.07994 * 123.01239 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47060 * 244.99733 * 12 11 10 24 24 H 1.09001 * 109.47380 * 4.99821 * 12 11 10 25 25 H 1.07998 * 120.42060 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.61581 * 180.20726 * 15 14 13 27 27 H 1.07998 * 119.61429 * 180.02562 * 17 16 15 28 28 H 1.07991 * 120.42226 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0084 -1.2143 0.0005 8 1 3.0884 -1.2144 0.0001 9 6 1.3077 -2.4279 0.0016 10 6 1.8346 -3.7234 0.0018 11 6 0.8882 -4.7073 0.0024 12 6 1.2899 -6.1597 0.0021 13 6 0.6392 -6.8612 1.1664 14 6 1.2762 -6.9365 2.3956 15 6 0.6467 -7.5842 3.4418 16 7 -0.5404 -8.1345 3.2779 17 6 -1.1734 -8.0864 2.1220 18 6 -0.6082 -7.4516 1.0323 19 7 -0.3706 -4.3654 -0.0022 20 16 -0.4483 -2.6704 0.0024 21 1 -0.4850 0.8401 -0.0004 22 1 2.8951 -3.9272 0.0015 23 1 0.9675 -6.6257 -0.9291 24 1 2.3735 -6.2371 0.0909 25 1 2.2503 -6.4914 2.5349 26 1 1.1348 -7.6443 4.4033 27 1 -2.1448 -8.5483 2.0259 28 1 -1.1313 -7.4159 0.0882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259331723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:07 Heat of formation + Delta-G solvation = 21.721487 kcal Electronic energy + Delta-G solvation = -14400.573573 eV Core-core repulsion = 11926.922301 eV Total energy + Delta-G solvation = -2473.651272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05903 -38.78923 -36.24067 -34.47990 -32.07622 -31.73968 -29.34028 -27.83914 -24.32575 -24.04944 -22.33547 -20.07110 -19.54514 -17.62832 -17.31906 -17.07892 -16.80707 -16.43861 -15.49905 -14.85927 -14.66988 -14.43625 -14.16304 -13.95936 -13.56781 -13.39923 -12.96765 -12.86140 -12.73587 -12.26207 -11.93563 -11.52506 -11.00149 -10.74016 -10.43275 -10.25966 -10.01830 -9.95591 -8.93066 -8.87474 -6.79602 0.27056 0.33625 0.67144 1.37246 1.51117 1.56776 1.58884 2.01734 2.15161 2.16709 2.92159 2.99089 3.61763 3.83163 3.92361 4.27318 4.28272 4.39526 4.57090 4.71306 4.84271 4.88518 4.95012 5.09934 5.19258 5.41374 5.49684 5.65124 5.84466 5.96236 6.34437 6.40578 6.77150 7.04503 7.93749 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043804 B = 0.005434 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.054043 B = 5151.829507 C = 5279.519004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.013 3.987 3 Si 1.017 2.983 4 H -0.246 1.246 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.384 4.384 8 H 0.114 0.886 9 C 0.026 3.974 10 C -0.430 4.430 11 C 0.149 3.851 12 C -0.007 4.007 13 C -0.030 4.030 14 C -0.176 4.176 15 C 0.087 3.913 16 N -0.513 5.513 17 C 0.086 3.914 18 C -0.162 4.162 19 N -0.616 5.616 20 S 0.104 5.896 21 H 0.311 0.689 22 H 0.130 0.870 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.147 0.853 26 H 0.180 0.820 27 H 0.176 0.824 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 -4.399 1.689 6.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.209 4.209 3 Si 0.834 3.166 4 H -0.169 1.169 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.421 4.421 8 H 0.131 0.869 9 C -0.100 4.100 10 C -0.464 4.464 11 C -0.018 4.018 12 C -0.049 4.049 13 C -0.039 4.039 14 C -0.195 4.195 15 C -0.069 4.069 16 N -0.223 5.223 17 C -0.070 4.070 18 C -0.181 4.181 19 N -0.440 5.440 20 S 0.252 5.748 21 H 0.123 0.877 22 H 0.147 0.853 23 H 0.109 0.891 24 H 0.122 0.878 25 H 0.165 0.835 26 H 0.197 0.803 27 H 0.193 0.807 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.275 -4.620 2.381 5.351 hybrid contribution 2.131 0.843 -0.863 2.449 sum 3.406 -3.777 1.518 5.307 Atomic orbital electron populations 1.69223 1.09546 1.32962 1.29276 1.27454 0.95932 1.06255 0.91235 0.84605 0.79262 0.73309 0.79429 1.16859 1.18373 1.18451 1.19733 0.96415 0.88850 1.37072 0.86854 1.23413 0.95530 0.96941 0.94129 1.20813 0.99718 0.90535 1.35309 1.20570 0.89412 0.96463 0.95375 1.19375 1.00947 0.88104 0.96471 1.20299 0.94658 0.93352 0.95602 1.22281 1.02706 1.01177 0.93373 1.23117 0.90966 0.93238 0.99606 1.67672 1.09799 1.19433 1.25410 1.23049 1.00002 0.96188 0.87781 1.22132 0.95688 0.98967 1.01352 1.76386 1.20777 1.07356 1.39517 1.85011 1.09342 1.02146 1.78255 0.87653 0.85263 0.89113 0.87785 0.83542 0.80272 0.80729 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.27 10.96 21.88 0.24 -37.03 15 2 C 0.01 0.59 5.50 85.34 0.47 1.06 15 3 Si 1.02 32.50 29.56 68.60 2.03 34.52 15 4 H -0.25 -7.45 7.11 99.48 0.71 -6.74 15 5 H -0.26 -7.96 7.11 99.48 0.71 -7.25 15 6 H -0.26 -8.01 7.11 99.48 0.71 -7.31 15 7 C -0.38 -18.73 9.40 23.21 0.22 -18.51 15 8 H 0.11 5.05 7.85 -2.91 -0.02 5.03 15 9 C 0.03 1.39 6.41 23.12 0.15 1.53 15 10 C -0.43 -21.20 9.96 22.26 0.22 -20.98 15 11 C 0.15 7.03 6.01 42.37 0.25 7.28 15 12 C -0.01 -0.25 5.82 29.10 0.17 -0.08 15 13 C -0.03 -1.04 4.98 -19.67 -0.10 -1.14 15 14 C -0.18 -5.45 9.82 22.36 0.22 -5.23 15 15 C 0.09 2.55 11.18 84.68 0.95 3.49 15 16 N -0.51 -16.41 10.36 -195.85 -2.03 -18.44 15 17 C 0.09 2.62 11.18 84.68 0.95 3.56 15 18 C -0.16 -5.32 9.82 22.36 0.22 -5.10 15 19 N -0.62 -32.06 11.78 -51.18 -0.60 -32.66 15 20 S 0.10 5.65 21.28 -56.49 -1.20 4.45 15 21 H 0.31 12.96 8.29 -92.71 -0.77 12.19 15 22 H 0.13 5.76 8.05 -2.91 -0.02 5.73 15 23 H 0.09 3.00 8.10 -2.39 -0.02 2.98 15 24 H 0.10 3.17 7.93 -2.39 -0.02 3.15 15 25 H 0.15 3.98 8.06 -2.91 -0.02 3.96 15 26 H 0.18 3.96 8.06 -2.91 -0.02 3.94 15 27 H 0.18 4.19 8.06 -2.91 -0.02 4.17 15 28 H 0.13 4.24 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -62.55 267.81 3.32 -59.22 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.17 Total: 24.06 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 3.72 Total: -34.12 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -2.39 Total: -88.14 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.52 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.20 Total: 4.45 kcal Total: -62.55 3.32 -59.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259331723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.946 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds