Wall clock time and date at job start Mon Mar 30 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.38919 * 119.95822 * 269.72580 * 10 9 7 12 12 O 1.34935 * 133.29019 * 0.73344 * 11 10 9 13 13 C 1.34485 * 110.88253 * 179.55934 * 12 11 10 14 14 C 1.33973 * 110.14375 * 359.71824 * 13 12 11 15 15 C 1.40411 * 119.45379 * 179.75492 * 11 10 9 16 16 C 1.39519 * 120.24096 * 0.52412 * 15 11 10 17 17 C 1.37977 * 119.68710 * 359.73197 * 16 15 11 18 18 C 1.38206 * 119.95409 * 90.00018 * 10 9 7 19 19 O 1.36622 * 131.13745 * 359.97438 * 18 10 9 20 20 C 1.43959 * 105.53294 * 162.63344 * 19 18 10 21 21 O 1.36589 * 131.27467 * 180.02562 * 17 16 15 22 22 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 23 23 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 24 24 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 25 25 H 1.07997 * 124.92966 * 179.75565 * 13 12 11 26 26 H 1.08000 * 126.90750 * 180.02562 * 14 13 12 27 27 H 1.07998 * 120.15466 * 179.71530 * 16 15 11 28 28 H 1.09006 * 110.55776 * 268.73770 * 20 19 18 29 29 H 1.08993 * 110.55904 * 145.90595 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2303 -3.6446 0.0165 11 6 2.6767 -4.1809 -1.1847 12 8 2.4289 -3.8869 -2.4781 13 6 3.1203 -4.7005 -3.2957 14 6 3.8562 -5.5594 -2.5775 15 6 3.5931 -5.2446 -1.1677 16 6 4.0427 -5.7654 0.0461 17 6 3.5869 -5.2265 1.2316 18 6 2.6787 -4.1638 1.2163 19 8 2.3914 -3.8214 2.5073 20 6 2.8090 -4.9439 3.3060 21 8 3.8637 -5.5439 2.5310 22 1 -0.4850 0.8401 -0.0041 23 1 0.6241 -2.5528 0.9015 24 1 0.6247 -2.5609 -0.8785 25 1 3.0876 -4.6662 -4.3746 26 1 4.5117 -6.3284 -2.9588 27 1 4.7440 -6.5866 0.0575 28 1 1.9856 -5.6455 3.4403 29 1 3.1874 -4.6073 4.2711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259337837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:54 Heat of formation + Delta-G solvation = -32.529057 kcal Electronic energy + Delta-G solvation = -17393.821363 eV Core-core repulsion = 14442.771989 eV Total energy + Delta-G solvation = -2951.049374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15393 -41.31173 -36.36922 -35.85627 -33.57610 -32.07221 -30.25916 -28.58199 -27.02663 -25.48088 -23.56084 -22.27718 -21.74573 -20.16312 -18.26218 -17.59671 -17.02158 -16.29236 -15.88092 -15.49203 -15.21976 -14.91343 -14.50436 -13.66693 -13.09932 -12.84769 -12.73504 -12.54236 -12.44854 -12.33364 -11.93495 -11.18098 -11.09906 -10.56852 -10.48890 -10.37402 -9.78094 -9.52235 -9.08441 -8.39536 -7.66376 -7.40852 -6.01205 -4.04601 1.31613 1.63400 2.71589 2.88416 3.33294 3.38591 3.41758 3.44049 3.95099 4.05000 4.47925 4.84134 4.92781 4.98014 5.08629 5.19094 5.33946 5.49173 5.57635 5.75227 5.87403 6.33265 6.38223 6.44696 6.58004 6.60665 6.83041 7.40678 7.50075 7.65685 7.68155 7.92750 8.29825 8.97636 9.58036 11.08915 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.009304 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.547311 B = 3008.793943 C = 4083.339899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.008 4.008 11 C 0.070 3.930 12 O -0.174 6.174 13 C 0.007 3.993 14 C -0.216 4.216 15 C -0.127 4.127 16 C -0.088 4.088 17 C 0.023 3.977 18 C 0.049 3.951 19 O -0.288 6.288 20 C 0.210 3.790 21 O -0.314 6.314 22 H 0.262 0.738 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.204 0.796 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -11.998 -0.904 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.010 4.010 11 C 0.022 3.978 12 O -0.074 6.074 13 C -0.059 4.059 14 C -0.235 4.235 15 C -0.128 4.128 16 C -0.107 4.107 17 C -0.021 4.021 18 C 0.005 3.995 19 O -0.203 6.203 20 C 0.098 3.902 21 O -0.230 6.230 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.221 0.779 26 H 0.171 0.829 27 H 0.149 0.851 28 H 0.096 0.904 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.700 -11.584 -0.753 12.933 hybrid contribution 0.576 0.737 0.199 0.956 sum 6.276 -10.847 -0.554 12.544 Atomic orbital electron populations 1.69955 1.06004 1.26816 1.50476 1.24966 0.94889 0.99164 0.95070 0.86517 0.79867 0.83054 0.78186 1.20524 1.21073 1.19791 1.20968 0.92908 0.89651 1.51113 0.92608 1.18259 0.92173 0.88746 0.99033 1.18190 0.99568 0.98468 0.84732 1.18685 0.98813 0.96657 0.83600 1.84127 1.58145 1.50989 1.14126 1.23948 0.94390 0.91347 0.96250 1.22262 1.06253 1.04533 0.90455 1.19463 1.01026 0.99011 0.93312 1.18797 1.03696 1.01657 0.86586 1.19458 0.99653 0.97710 0.85275 1.18848 0.99056 0.96185 0.85433 1.87502 1.80739 1.38198 1.13905 1.25555 0.87409 0.83835 0.93425 1.87295 1.47484 1.73785 1.14472 0.92822 0.94499 0.94640 0.77901 0.82852 0.85120 0.90431 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.29 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.51 -14.93 9.09 -34.44 -0.31 -15.25 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 9 C 0.05 1.49 5.09 -29.04 -0.15 1.34 15 10 C -0.01 -0.20 5.09 -104.38 -0.53 -0.73 15 11 C 0.07 1.49 7.06 -38.51 -0.27 1.22 15 12 O -0.17 -3.46 10.59 3.45 0.04 -3.43 15 13 C 0.01 0.09 11.96 29.23 0.35 0.44 15 14 C -0.22 -3.06 11.14 -37.61 -0.42 -3.48 15 15 C -0.13 -2.28 6.39 -105.13 -0.67 -2.96 15 16 C -0.09 -1.52 10.11 -39.20 -0.40 -1.91 15 17 C 0.02 0.43 7.13 -39.09 -0.28 0.16 15 18 C 0.05 1.07 6.80 -39.01 -0.27 0.80 15 19 O -0.29 -5.94 11.35 -46.09 -0.52 -6.46 15 20 C 0.21 3.10 8.88 101.05 0.90 3.99 15 21 O -0.31 -5.31 11.41 -45.98 -0.52 -5.83 15 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 23 H 0.04 1.06 8.05 -51.93 -0.42 0.64 15 24 H 0.04 1.01 8.08 -51.93 -0.42 0.59 15 25 H 0.20 1.84 8.06 -52.49 -0.42 1.42 15 26 H 0.15 1.60 8.06 -52.49 -0.42 1.18 15 27 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 15 29 H 0.13 1.40 8.14 -51.93 -0.42 0.98 15 LS Contribution 264.34 15.07 3.98 3.98 Total: -1.00 -33.70 264.34 -5.95 -39.65 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -2.49 Total: -4.13 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.15 Total: -14.68 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.01 Total: -15.72 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.70 -5.95 -39.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259337837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.124 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds