Wall clock time and date at job start Mon Mar 30 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.38919 * 119.95822 * 269.72580 * 10 9 7 12 12 O 1.34935 * 133.29019 * 0.73344 * 11 10 9 13 13 C 1.34485 * 110.88253 * 179.55934 * 12 11 10 14 14 C 1.33973 * 110.14375 * 359.71824 * 13 12 11 15 15 C 1.40411 * 119.45379 * 179.75492 * 11 10 9 16 16 C 1.39519 * 120.24096 * 0.52412 * 15 11 10 17 17 C 1.37977 * 119.68710 * 359.73197 * 16 15 11 18 18 C 1.38206 * 119.95409 * 90.00018 * 10 9 7 19 19 O 1.36622 * 131.13745 * 359.97438 * 18 10 9 20 20 C 1.43959 * 105.53294 * 162.63344 * 19 18 10 21 21 O 1.36589 * 131.27467 * 180.02562 * 17 16 15 22 22 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 23 23 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 24 24 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 25 25 H 1.07997 * 124.92966 * 179.75565 * 13 12 11 26 26 H 1.08000 * 126.90750 * 180.02562 * 14 13 12 27 27 H 1.07998 * 120.15466 * 179.71530 * 16 15 11 28 28 H 1.09006 * 110.55776 * 268.73770 * 20 19 18 29 29 H 1.08993 * 110.55904 * 145.90595 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2303 -3.6446 0.0165 11 6 2.6767 -4.1809 -1.1847 12 8 2.4289 -3.8869 -2.4781 13 6 3.1203 -4.7005 -3.2957 14 6 3.8562 -5.5594 -2.5775 15 6 3.5931 -5.2446 -1.1677 16 6 4.0427 -5.7654 0.0461 17 6 3.5869 -5.2265 1.2316 18 6 2.6787 -4.1638 1.2163 19 8 2.3914 -3.8214 2.5073 20 6 2.8090 -4.9439 3.3060 21 8 3.8637 -5.5439 2.5310 22 1 -0.4850 0.8401 -0.0041 23 1 0.6241 -2.5528 0.9015 24 1 0.6247 -2.5609 -0.8785 25 1 3.0876 -4.6662 -4.3746 26 1 4.5117 -6.3284 -2.9588 27 1 4.7440 -6.5866 0.0575 28 1 1.9856 -5.6455 3.4403 29 1 3.1874 -4.6073 4.2711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259337837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:54 Heat of formation + Delta-G solvation = -55.490016 kcal Electronic energy + Delta-G solvation = -17394.817025 eV Core-core repulsion = 14442.771989 eV Total energy + Delta-G solvation = -2952.045036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.53809 -42.68191 -37.86733 -37.28753 -35.51773 -33.78699 -31.81490 -29.94328 -28.91793 -26.73735 -25.52763 -23.72853 -23.23243 -21.59759 -19.64376 -18.96584 -18.69291 -18.21330 -17.32420 -16.93352 -16.51469 -16.45006 -16.32481 -15.11282 -14.63149 -14.53111 -14.41786 -14.00162 -13.86654 -13.59834 -13.43206 -13.21060 -12.95673 -12.56867 -12.36950 -11.75097 -11.65630 -11.46204 -10.66089 -10.59401 -9.12610 -8.85836 -8.24417 -6.39210 -0.10884 0.16156 1.34307 1.37341 1.46933 1.50199 1.54552 2.14441 2.35088 2.54916 2.72962 3.05029 3.44271 3.64126 3.79341 3.86389 4.08072 4.20538 4.31931 4.50099 4.68591 4.80765 4.92909 5.02394 5.09232 5.18697 5.22793 5.57084 5.59740 5.64666 6.03371 6.07612 6.29306 6.69292 7.28304 8.84930 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.009304 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.547311 B = 3008.793943 C = 4083.339899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.046 0.954 9 C 0.071 3.929 10 C -0.054 4.054 11 C 0.038 3.962 12 O -0.211 6.211 13 C 0.006 3.994 14 C -0.202 4.202 15 C -0.128 4.128 16 C -0.070 4.070 17 C 0.018 3.982 18 C 0.032 3.968 19 O -0.324 6.324 20 C 0.202 3.798 21 O -0.311 6.311 22 H 0.268 0.732 23 H 0.004 0.996 24 H 0.005 0.995 25 H 0.254 0.746 26 H 0.202 0.798 27 H 0.174 0.826 28 H 0.105 0.895 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 -13.342 -1.661 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.065 0.935 9 C 0.034 3.966 10 C -0.055 4.055 11 C -0.009 4.009 12 O -0.112 6.112 13 C -0.058 4.058 14 C -0.220 4.220 15 C -0.129 4.129 16 C -0.088 4.088 17 C -0.026 4.026 18 C -0.012 4.012 19 O -0.241 6.241 20 C 0.091 3.909 21 O -0.227 6.227 22 H 0.077 0.923 23 H 0.022 0.978 24 H 0.023 0.977 25 H 0.270 0.730 26 H 0.219 0.781 27 H 0.192 0.808 28 H 0.122 0.878 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.100 -12.951 -1.505 15.350 hybrid contribution -0.177 1.047 0.422 1.143 sum 7.923 -11.904 -1.083 14.341 Atomic orbital electron populations 1.70078 1.07652 1.28141 1.50875 1.25936 0.95869 1.03131 0.94194 0.85402 0.78471 0.78069 0.78864 1.19151 1.19812 1.19347 1.21231 0.92628 0.91246 1.51674 0.93519 1.17832 0.92438 0.90558 0.95790 1.18012 1.01226 0.99091 0.87165 1.18825 1.00334 0.98188 0.83568 1.84104 1.59794 1.53043 1.14257 1.25063 0.92902 0.89960 0.97875 1.22762 1.06313 1.05141 0.87812 1.19952 0.99671 0.97614 0.95663 1.19296 1.02667 1.01454 0.85418 1.19592 0.99297 0.97078 0.86617 1.19041 0.99856 0.97090 0.85209 1.87436 1.81373 1.41057 1.14226 1.26149 0.88135 0.83121 0.93482 1.87273 1.48135 1.73748 1.13583 0.92331 0.97808 0.97679 0.72991 0.78108 0.80845 0.87763 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.29 21.45 0.28 -58.11 15 2 C 0.01 0.43 5.46 84.66 0.46 0.89 15 3 Si 0.97 46.46 29.54 68.60 2.03 48.49 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 7 C -0.53 -32.89 9.09 25.60 0.23 -32.65 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.07 4.19 5.09 29.10 0.15 4.34 15 10 C -0.05 -2.69 5.09 -19.71 -0.10 -2.79 15 11 C 0.04 1.68 7.06 22.96 0.16 1.84 15 12 O -0.21 -8.53 10.59 -10.58 -0.11 -8.64 15 13 C 0.01 0.15 11.96 66.85 0.80 0.95 15 14 C -0.20 -4.92 11.14 23.55 0.26 -4.66 15 15 C -0.13 -4.36 6.39 -20.19 -0.13 -4.49 15 16 C -0.07 -2.21 10.11 22.52 0.23 -1.98 15 17 C 0.02 0.68 7.13 22.58 0.16 0.84 15 18 C 0.03 1.46 6.80 22.64 0.15 1.61 15 19 O -0.32 -13.90 11.35 -77.50 -0.88 -14.78 15 20 C 0.20 5.74 8.88 113.37 1.01 6.75 15 21 O -0.31 -9.97 11.41 -77.11 -0.88 -10.85 15 22 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 23 H 0.00 0.23 8.05 -2.39 -0.02 0.21 15 24 H 0.00 0.31 8.08 -2.39 -0.02 0.29 15 25 H 0.25 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.20 2.91 8.06 -2.91 -0.02 2.88 15 27 H 0.17 3.95 8.06 -2.91 -0.02 3.93 15 28 H 0.10 2.39 8.14 -2.38 -0.02 2.37 15 29 H 0.16 3.29 8.14 -2.39 -0.02 3.27 15 Total: -1.00 -79.24 264.34 5.01 -74.23 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: 1.18 Total: -1.00 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.39 Total: -29.34 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.11 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.87 Total: -34.26 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -79.24 5.01 -74.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259337837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.742 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds