Wall clock time and date at job start Mon Mar 30 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00448 * 2 1 4 4 H 1.48493 * 109.46954 * 240.00019 * 3 2 1 5 5 H 1.48507 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46950 * 119.99741 * 3 2 1 7 7 C 1.40219 * 119.99402 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.40129 * 120.00360 * 0.02562 * 7 2 1 10 10 C 1.39846 * 127.86724 * 179.97438 * 9 7 2 11 11 C 1.36516 * 113.98223 * 180.02562 * 10 9 7 12 12 C 1.50706 * 120.65573 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46945 * 124.99784 * 12 11 10 14 14 C 1.38675 * 120.41497 * 90.00306 * 13 12 11 15 15 C 1.38631 * 118.41792 * 180.02562 * 14 13 12 16 16 C 1.38221 * 119.16077 * 0.25627 * 15 14 13 17 17 N 1.31861 * 120.76518 * 359.45246 * 16 15 14 18 18 C 1.31882 * 121.72456 * 0.58353 * 17 16 15 19 19 N 1.30430 * 118.69497 * 0.25177 * 11 10 9 20 20 S 1.69680 * 107.81898 * 359.63233 * 19 11 10 21 21 H 0.97008 * 119.99674 * 359.97438 * 1 2 3 22 22 H 1.08001 * 123.01192 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.46875 * 5.00108 * 12 11 10 24 24 H 1.08995 * 109.47164 * 244.99643 * 12 11 10 25 25 H 1.07998 * 120.79161 * 359.97438 * 14 13 12 26 26 H 1.08002 * 120.41548 * 179.97438 * 15 14 13 27 27 H 1.08002 * 119.62066 * 179.74470 * 16 15 14 28 28 H 1.07993 * 119.62089 * 179.70697 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6962 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0084 -1.2144 0.0005 8 1 3.0883 -1.2144 0.0010 9 6 1.3077 -2.4279 0.0005 10 6 1.8345 -3.7234 0.0005 11 6 0.8881 -4.7072 0.0000 12 6 1.2898 -6.1598 -0.0007 13 6 0.6381 -6.8617 1.1629 14 6 -0.6097 -7.4495 1.0188 15 6 -1.1709 -8.0837 2.1163 16 6 -0.4755 -8.1043 3.3107 17 7 0.7119 -7.5395 3.4097 18 6 1.2760 -6.9271 2.3869 19 7 -0.3706 -4.3654 -0.0055 20 16 -0.4484 -2.6704 -0.0003 21 1 -0.4850 0.8401 0.0004 22 1 2.8951 -3.9272 0.0009 23 1 2.3733 -6.2371 0.0890 24 1 0.9680 -6.6253 -0.9322 25 1 -1.1321 -7.4133 0.0743 26 1 -2.1412 -8.5518 2.0403 27 1 -0.9076 -8.5928 4.1716 28 1 2.2478 -6.4719 2.5072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259342657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:46 Heat of formation + Delta-G solvation = 38.457444 kcal Electronic energy + Delta-G solvation = -14407.681419 eV Core-core repulsion = 11934.755873 eV Total energy + Delta-G solvation = -2472.925547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80476 -36.97743 -34.41296 -32.78783 -31.51192 -29.80464 -27.41252 -25.95447 -23.16824 -22.51734 -20.71996 -18.23622 -17.63385 -16.72147 -15.99916 -15.34347 -15.27790 -14.71146 -13.94248 -13.44724 -13.17293 -12.66998 -12.54443 -12.48939 -12.07494 -11.76292 -11.55047 -11.19316 -11.01412 -10.90946 -10.48012 -9.83307 -9.39853 -9.13583 -9.03025 -8.78782 -8.38663 -8.01218 -7.14550 -6.87318 -4.85485 1.46760 1.66860 2.49659 2.85222 2.89300 3.02664 3.53989 3.59366 3.91791 3.98599 4.22222 4.76146 4.85063 5.13681 5.30910 5.37859 5.43450 5.72259 6.02487 6.07213 6.19281 6.32975 6.46719 6.66865 6.71975 7.03887 7.08507 7.30870 7.50259 7.83139 8.22179 8.29207 8.30137 8.64997 9.68009 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043723 B = 0.005458 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.239503 B = 5128.410126 C = 5257.750207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.053 3.947 3 Si 0.937 3.063 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.369 4.369 8 H 0.098 0.902 9 C 0.052 3.948 10 C -0.409 4.409 11 C 0.148 3.852 12 C -0.006 4.006 13 C -0.102 4.102 14 C -0.056 4.056 15 C -0.176 4.176 16 C 0.079 3.921 17 N -0.489 5.489 18 C 0.099 3.901 19 N -0.599 5.599 20 S 0.159 5.841 21 H 0.300 0.700 22 H 0.114 0.886 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -5.828 0.988 5.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.406 4.406 8 H 0.116 0.884 9 C -0.074 4.074 10 C -0.442 4.442 11 C -0.021 4.021 12 C -0.049 4.049 13 C -0.105 4.105 14 C -0.082 4.082 15 C -0.196 4.196 16 C -0.078 4.078 17 N -0.198 5.198 18 C -0.057 4.057 19 N -0.424 5.424 20 S 0.308 5.692 21 H 0.112 0.888 22 H 0.132 0.868 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.165 0.835 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.028 -5.617 1.784 5.983 hybrid contribution 1.614 0.551 -0.815 1.890 sum 0.587 -5.067 0.969 5.192 Atomic orbital electron populations 1.69149 1.07819 1.31310 1.30409 1.26333 0.95219 1.02871 0.92687 0.85835 0.79723 0.77972 0.80459 1.18317 1.19686 1.18313 1.19153 0.95434 0.88390 1.37664 0.88389 1.22967 0.95938 0.95434 0.93105 1.20537 0.98760 0.90733 1.34204 1.20029 0.90198 0.94206 0.97626 1.19221 0.99387 0.91055 0.95218 1.20809 0.95717 0.97029 0.96935 1.21447 0.93952 0.93650 0.99155 1.22053 1.01209 1.01910 0.94451 1.22594 0.91130 0.97182 0.96848 1.67628 1.11303 1.08816 1.32016 1.22630 0.99848 0.95258 0.88001 1.76271 1.19691 1.08770 1.37632 1.85037 1.07705 1.00098 1.76337 0.88794 0.86806 0.90090 0.90475 0.85074 0.85393 0.83472 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.21 10.96 55.56 0.61 -17.60 15 2 C 0.05 1.23 5.50 -17.27 -0.09 1.13 15 3 Si 0.94 16.84 29.56 -169.99 -5.03 11.81 15 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 5 H -0.27 -4.75 7.11 56.52 0.40 -4.34 15 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 7 C -0.37 -9.13 9.40 -38.13 -0.36 -9.49 15 8 H 0.10 2.24 7.85 -52.49 -0.41 1.83 15 9 C 0.05 1.38 6.41 -38.27 -0.25 1.14 15 10 C -0.41 -10.10 9.96 -39.60 -0.39 -10.49 15 11 C 0.15 3.47 6.01 -83.81 -0.50 2.97 15 12 C -0.01 -0.11 5.80 -29.03 -0.17 -0.28 15 13 C -0.10 -1.82 4.96 -104.48 -0.52 -2.34 15 14 C -0.06 -0.93 9.86 -39.28 -0.39 -1.31 15 15 C -0.18 -2.56 10.11 -39.44 -0.40 -2.96 15 16 C 0.08 1.19 11.18 -17.54 -0.20 1.00 15 17 N -0.49 -8.51 10.36 -13.25 -0.14 -8.65 15 18 C 0.10 1.75 10.86 -17.55 -0.19 1.55 15 19 N -0.60 -15.34 11.78 32.47 0.38 -14.96 15 20 S 0.16 4.21 21.28 -107.50 -2.29 1.92 15 21 H 0.30 6.40 8.29 -40.82 -0.34 6.06 15 22 H 0.11 2.58 8.06 -52.49 -0.42 2.16 15 23 H 0.08 1.30 7.93 -51.93 -0.41 0.89 15 24 H 0.08 1.31 8.09 -51.93 -0.42 0.89 15 25 H 0.13 2.06 8.06 -52.49 -0.42 1.64 15 26 H 0.13 1.46 8.06 -52.49 -0.42 1.03 15 27 H 0.15 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.15 2.44 8.06 -52.49 -0.42 2.01 15 LS Contribution 267.77 15.07 4.04 4.04 Total: -1.00 -29.05 267.77 -8.37 -37.42 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.49 Total: 5.10 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.46 Total: -19.09 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.85 Total: -41.21 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.29 Total: 1.92 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.05 -8.37 -37.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259342657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.879 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds