Wall clock time and date at job start Mon Mar 30 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00448 * 2 1 4 4 H 1.48493 * 109.46954 * 240.00019 * 3 2 1 5 5 H 1.48507 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46950 * 119.99741 * 3 2 1 7 7 C 1.40219 * 119.99402 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.40129 * 120.00360 * 0.02562 * 7 2 1 10 10 C 1.39846 * 127.86724 * 179.97438 * 9 7 2 11 11 C 1.36516 * 113.98223 * 180.02562 * 10 9 7 12 12 C 1.50706 * 120.65573 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46945 * 124.99784 * 12 11 10 14 14 C 1.38675 * 120.41497 * 90.00306 * 13 12 11 15 15 C 1.38631 * 118.41792 * 180.02562 * 14 13 12 16 16 C 1.38221 * 119.16077 * 0.25627 * 15 14 13 17 17 N 1.31861 * 120.76518 * 359.45246 * 16 15 14 18 18 C 1.31882 * 121.72456 * 0.58353 * 17 16 15 19 19 N 1.30430 * 118.69497 * 0.25177 * 11 10 9 20 20 S 1.69680 * 107.81898 * 359.63233 * 19 11 10 21 21 H 0.97008 * 119.99674 * 359.97438 * 1 2 3 22 22 H 1.08001 * 123.01192 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.46875 * 5.00108 * 12 11 10 24 24 H 1.08995 * 109.47164 * 244.99643 * 12 11 10 25 25 H 1.07998 * 120.79161 * 359.97438 * 14 13 12 26 26 H 1.08002 * 120.41548 * 179.97438 * 15 14 13 27 27 H 1.08002 * 119.62066 * 179.74470 * 16 15 14 28 28 H 1.07993 * 119.62089 * 179.70697 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6962 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0084 -1.2144 0.0005 8 1 3.0883 -1.2144 0.0010 9 6 1.3077 -2.4279 0.0005 10 6 1.8345 -3.7234 0.0005 11 6 0.8881 -4.7072 0.0000 12 6 1.2898 -6.1598 -0.0007 13 6 0.6381 -6.8617 1.1629 14 6 -0.6097 -7.4495 1.0188 15 6 -1.1709 -8.0837 2.1163 16 6 -0.4755 -8.1043 3.3107 17 7 0.7119 -7.5395 3.4097 18 6 1.2760 -6.9271 2.3869 19 7 -0.3706 -4.3654 -0.0055 20 16 -0.4484 -2.6704 -0.0003 21 1 -0.4850 0.8401 0.0004 22 1 2.8951 -3.9272 0.0009 23 1 2.3733 -6.2371 0.0890 24 1 0.9680 -6.6253 -0.9322 25 1 -1.1321 -7.4133 0.0743 26 1 -2.1412 -8.5518 2.0403 27 1 -0.9076 -8.5928 4.1716 28 1 2.2478 -6.4719 2.5072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259342657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:45 Heat of formation + Delta-G solvation = 21.827911 kcal Electronic energy + Delta-G solvation = -14408.402530 eV Core-core repulsion = 11934.755873 eV Total energy + Delta-G solvation = -2473.646657 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07600 -38.74743 -36.21923 -34.20766 -32.76459 -31.65765 -28.93381 -27.75408 -24.42703 -24.01635 -22.32326 -20.02976 -19.52654 -17.94804 -17.41648 -17.07699 -16.91061 -16.02774 -15.50378 -14.84027 -14.60194 -14.11971 -14.05882 -13.93196 -13.80975 -13.40226 -13.15837 -12.74954 -12.72376 -12.31959 -11.98062 -11.48739 -10.99129 -10.70927 -10.52672 -10.38596 -9.96187 -9.79803 -8.91985 -8.85507 -6.78646 0.22340 0.39988 0.68839 1.37155 1.53982 1.54773 1.58258 2.02583 2.16902 2.17722 2.91638 2.99961 3.59891 3.94477 4.01568 4.15502 4.18322 4.44008 4.54885 4.78779 4.84658 4.88817 4.92168 5.20715 5.23649 5.41170 5.44329 5.66563 5.84596 5.96647 6.35500 6.41154 6.79042 7.04765 7.94291 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043723 B = 0.005458 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.239503 B = 5128.410126 C = 5257.750207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.014 3.986 3 Si 1.016 2.984 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.252 1.252 7 C -0.386 4.386 8 H 0.113 0.887 9 C 0.026 3.974 10 C -0.432 4.432 11 C 0.149 3.851 12 C 0.000 4.000 13 C -0.120 4.120 14 C -0.069 4.069 15 C -0.170 4.170 16 C 0.077 3.923 17 N -0.510 5.510 18 C 0.085 3.915 19 N -0.615 5.615 20 S 0.102 5.898 21 H 0.311 0.689 22 H 0.129 0.871 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.183 0.817 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -5.641 1.381 6.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.208 4.208 3 Si 0.834 3.166 4 H -0.174 1.174 5 H -0.186 1.186 6 H -0.176 1.176 7 C -0.423 4.423 8 H 0.131 0.869 9 C -0.100 4.100 10 C -0.465 4.465 11 C -0.018 4.018 12 C -0.043 4.043 13 C -0.123 4.123 14 C -0.096 4.096 15 C -0.189 4.189 16 C -0.080 4.080 17 N -0.219 5.219 18 C -0.072 4.072 19 N -0.440 5.440 20 S 0.251 5.749 21 H 0.123 0.877 22 H 0.147 0.853 23 H 0.120 0.880 24 H 0.108 0.892 25 H 0.152 0.848 26 H 0.181 0.819 27 H 0.200 0.800 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.475 -5.463 2.172 5.898 hybrid contribution 1.405 0.474 -0.907 1.738 sum 0.930 -4.989 1.266 5.230 Atomic orbital electron populations 1.69221 1.09516 1.33049 1.29247 1.27451 0.95945 1.06222 0.91227 0.84694 0.78345 0.72780 0.80816 1.17397 1.18593 1.17604 1.19683 0.96427 0.88920 1.37277 0.86890 1.23399 0.95574 0.96920 0.94094 1.20832 0.99762 0.90585 1.35342 1.20634 0.89380 0.96679 0.95104 1.19267 1.00812 0.87849 0.96361 1.20786 0.96583 0.98178 0.96761 1.21679 0.93727 0.93954 1.00193 1.22429 1.02313 1.00750 0.93422 1.23247 0.90309 0.96176 0.98257 1.67662 1.12606 1.09535 1.32074 1.22765 1.00405 0.95809 0.88176 1.76366 1.20765 1.07244 1.39624 1.84978 1.09302 1.02272 1.78340 0.87651 0.85315 0.88029 0.89161 0.84761 0.81899 0.79998 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.62 10.96 21.88 0.24 -37.38 15 2 C 0.01 0.62 5.50 85.34 0.47 1.09 15 3 Si 1.02 32.93 29.56 68.60 2.03 34.96 15 4 H -0.25 -7.76 7.11 99.48 0.71 -7.05 15 5 H -0.26 -8.00 7.11 99.48 0.71 -7.29 15 6 H -0.25 -7.90 7.11 99.48 0.71 -7.19 15 7 C -0.39 -19.10 9.40 23.21 0.22 -18.89 15 8 H 0.11 5.09 7.85 -2.91 -0.02 5.07 15 9 C 0.03 1.42 6.41 23.12 0.15 1.56 15 10 C -0.43 -21.60 9.96 22.26 0.22 -21.38 15 11 C 0.15 7.10 6.01 42.37 0.25 7.36 15 12 C 0.00 -0.01 5.80 29.11 0.17 0.16 15 13 C -0.12 -4.22 4.96 -19.77 -0.10 -4.31 15 14 C -0.07 -2.22 9.86 22.47 0.22 -2.00 15 15 C -0.17 -4.53 10.11 22.36 0.23 -4.30 15 16 C 0.08 2.13 11.18 84.68 0.95 3.08 15 17 N -0.51 -17.13 10.36 -195.85 -2.03 -19.16 15 18 C 0.08 2.93 10.86 84.67 0.92 3.85 15 19 N -0.62 -32.13 11.78 -51.18 -0.60 -32.73 15 20 S 0.10 5.61 21.28 -56.49 -1.20 4.41 15 21 H 0.31 13.15 8.29 -92.70 -0.77 12.38 15 22 H 0.13 5.84 8.06 -2.91 -0.02 5.82 15 23 H 0.10 3.17 7.93 -2.39 -0.02 3.15 15 24 H 0.09 2.99 8.09 -2.39 -0.02 2.97 15 25 H 0.13 4.11 8.06 -2.91 -0.02 4.09 15 26 H 0.16 3.13 8.06 -2.91 -0.02 3.10 15 27 H 0.18 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.16 5.02 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -63.36 267.77 3.30 -60.06 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.17 Total: 23.63 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.70 Total: -33.78 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -2.39 Total: -89.27 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.20 Total: 4.41 kcal Total: -63.36 3.30 -60.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259342657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.888 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds