Wall clock time and date at job start Mon Mar 30 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37887 * 119.97632 * 2 1 4 4 C 1.38618 * 120.67716 * 179.97438 * 3 2 1 5 5 C 1.37942 * 120.15257 * 0.02562 * 4 3 2 6 6 C 1.39095 * 119.66615 * 0.02562 * 5 4 3 7 7 C 1.47743 * 133.82497 * 179.97438 * 6 5 4 8 8 C 1.39995 * 127.40382 * 0.02867 * 7 6 5 9 9 H 1.08000 * 119.99984 * 136.87310 * 8 7 6 10 10 C 1.40606 * 120.00237 * 316.87471 * 8 7 6 11 11 N 1.30458 * 120.00371 * 157.60235 * 10 8 7 12 12 Si 1.86803 * 119.99607 * 337.60286 * 10 8 7 13 13 H 1.48502 * 109.47047 * 95.82703 * 12 10 8 14 14 H 1.48499 * 109.46832 * 215.82507 * 12 10 8 15 15 H 1.48498 * 109.47337 * 335.82923 * 12 10 8 16 16 C 1.40583 * 105.19122 * 180.02562 * 7 6 5 17 17 C 1.46381 * 125.55904 * 180.02562 * 16 7 6 18 18 O 1.21656 * 120.00007 * 5.11936 * 17 16 7 19 19 O 1.34990 * 119.99919 * 185.11622 * 17 16 7 20 20 O 1.34553 * 108.87890 * 0.02562 * 16 7 6 21 21 C 1.34900 * 111.60714 * 359.73568 * 20 16 7 22 22 H 1.09003 * 109.46911 * 90.00257 * 1 2 3 23 23 H 1.09005 * 109.47140 * 209.99992 * 1 2 3 24 24 H 1.08997 * 109.47151 * 330.00175 * 1 2 3 25 25 H 1.08000 * 119.66337 * 359.97438 * 3 2 1 26 26 H 1.07993 * 119.92556 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.16692 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00074 * 179.97438 * 11 10 8 29 29 H 0.96702 * 114.00302 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1944 0.0000 4 6 3.5820 1.2114 0.0005 5 6 4.2894 0.0272 0.0005 6 6 3.6049 -1.1837 -0.0005 7 6 4.0293 -2.5988 -0.0013 8 6 5.3388 -3.0939 -0.0006 9 1 5.6020 -3.9239 0.6383 10 6 6.3115 -2.5106 -0.8317 11 7 7.5775 -2.6417 -0.5457 12 14 5.7907 -1.5478 -2.3454 13 1 5.7383 -0.1003 -2.0176 14 1 6.7720 -1.7730 -3.4370 15 1 4.4478 -2.0046 -2.7849 16 6 2.8356 -3.3414 -0.0029 17 6 2.7419 -4.8023 -0.0036 18 8 3.7500 -5.4765 0.0912 19 8 1.5367 -5.4012 -0.1094 20 8 1.7934 -2.4904 -0.0036 21 6 2.2020 -1.2047 0.0031 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6501 2.1263 -0.0004 26 1 4.1093 2.1538 0.0009 27 1 5.3693 0.0401 0.0005 28 1 8.2485 -2.2395 -1.1193 29 1 1.5755 -6.3674 -0.1011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259362729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:09 Heat of formation + Delta-G solvation = -79.317025 kcal Electronic energy + Delta-G solvation = -17511.196993 eV Core-core repulsion = 14558.118740 eV Total energy + Delta-G solvation = -2953.078253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06877 -38.70789 -37.14591 -35.08721 -34.31770 -32.64287 -30.83070 -29.00813 -26.39737 -26.24553 -23.35461 -21.79174 -20.30400 -19.50415 -17.65424 -17.29948 -16.33445 -16.07856 -15.30776 -14.94824 -14.80132 -14.10658 -14.07039 -13.22487 -12.97089 -12.91714 -12.74972 -12.34835 -11.92679 -11.72203 -11.57819 -11.33761 -10.91136 -10.84107 -10.59401 -10.46948 -10.08476 -9.64666 -9.44884 -8.71491 -7.82894 -7.35833 -7.23590 -4.75693 1.40275 2.00578 2.58112 2.94996 3.00139 3.13892 3.68128 3.76234 3.98320 4.27866 4.39600 4.73829 5.26266 5.33989 5.61670 5.64502 5.88223 5.92789 6.01032 6.08159 6.25778 6.49291 6.58620 6.74105 6.94672 6.96964 7.14248 7.23005 7.35626 7.43404 8.01673 8.06824 8.35040 8.44925 9.09279 9.67968 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.013860 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.311052 B = 2019.729581 C = 3411.387022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.172 4.172 5 C -0.055 4.055 6 C -0.160 4.160 7 C 0.093 3.907 8 C -0.381 4.381 9 H 0.116 0.884 10 C 0.090 3.910 11 N -0.764 5.764 12 Si 0.888 3.112 13 H -0.247 1.247 14 H -0.274 1.274 15 H -0.246 1.246 16 C -0.233 4.233 17 C 0.548 3.452 18 O -0.527 6.527 19 O -0.521 6.521 20 O -0.190 6.190 21 C 0.102 3.898 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.294 0.706 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 6.267 -1.327 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.191 4.191 5 C -0.073 4.073 6 C -0.162 4.162 7 C 0.088 3.912 8 C -0.407 4.407 9 H 0.134 0.866 10 C -0.135 4.135 11 N -0.387 5.387 12 Si 0.710 3.290 13 H -0.172 1.172 14 H -0.199 1.199 15 H -0.169 1.169 16 C -0.279 4.279 17 C 0.401 3.599 18 O -0.422 6.422 19 O -0.331 6.331 20 O -0.094 6.094 21 C 0.052 3.948 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.350 6.424 -1.323 9.129 hybrid contribution 0.174 -0.241 -0.588 0.659 sum -6.177 6.183 -1.910 8.946 Atomic orbital electron populations 1.20605 0.91188 1.02277 1.01819 1.18670 0.95598 0.88856 1.08473 1.20601 0.93998 0.95843 1.00164 1.20760 0.93914 0.97320 1.07069 1.20617 0.99823 0.90586 0.96322 1.20223 0.93359 0.94712 1.07858 1.18661 0.92694 0.87414 0.92399 1.19080 0.89346 1.13879 1.18361 0.86635 1.26299 0.94011 0.93696 0.99491 1.69539 1.02080 1.32183 1.34872 0.86646 0.81214 0.81051 0.80109 1.17158 1.19949 1.16853 1.20059 0.84444 0.86046 1.37368 1.18603 0.80410 0.85706 0.75137 1.90891 1.36583 1.63734 1.50997 1.85110 1.34532 1.25819 1.87650 1.83672 1.34376 1.12299 1.79102 1.19465 0.92494 0.84553 0.98325 0.91862 0.91655 0.91967 0.85859 0.86245 0.85949 0.89484 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.01 36.01 0.36 -1.13 15 2 C -0.12 -2.11 5.89 -104.44 -0.62 -2.73 15 3 C -0.09 -1.42 9.66 -39.57 -0.38 -1.81 15 4 C -0.17 -2.97 10.04 -39.55 -0.40 -3.37 15 5 C -0.06 -1.15 7.61 -39.37 -0.30 -1.45 15 6 C -0.16 -3.79 5.05 -104.92 -0.53 -4.32 15 7 C 0.09 2.45 4.89 -104.47 -0.51 1.93 15 8 C -0.38 -10.35 8.78 -38.03 -0.33 -10.69 15 9 H 0.12 3.41 7.47 -52.49 -0.39 3.02 15 10 C 0.09 2.26 5.31 -17.24 -0.09 2.17 15 11 N -0.76 -19.05 13.91 55.58 0.77 -18.27 15 12 Si 0.89 19.52 24.71 -169.99 -4.20 15.32 15 13 H -0.25 -5.01 5.89 56.52 0.33 -4.67 15 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 15 H -0.25 -5.83 7.11 56.52 0.40 -5.43 15 16 C -0.23 -6.06 7.26 -35.42 -0.26 -6.31 15 17 C 0.55 13.41 8.27 34.01 0.28 13.69 15 18 O -0.53 -13.92 16.13 -19.38 -0.31 -14.23 15 19 O -0.52 -10.40 13.56 -43.01 -0.58 -10.98 15 20 O -0.19 -4.67 10.54 2.78 0.03 -4.64 15 21 C 0.10 2.30 7.01 -38.49 -0.27 2.03 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.06 1.00 8.09 -51.93 -0.42 0.58 15 24 H 0.06 0.73 8.08 -51.93 -0.42 0.31 15 25 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.12 2.50 6.56 -52.49 -0.34 2.16 15 28 H 0.29 6.48 8.29 -40.82 -0.34 6.14 15 29 H 0.39 5.59 8.98 45.56 0.41 6.00 15 LS Contribution 260.47 15.07 3.93 3.93 Total: -1.00 -30.21 260.47 -5.05 -35.27 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -1.64 Total: 5.59 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.05 Total: -11.98 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.77 Total: -18.27 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.87 Total: -29.85 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.20 Total: 15.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.21 -5.05 -35.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259362729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.051 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds