Wall clock time and date at job start Mon Mar 30 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37887 * 119.97632 * 2 1 4 4 C 1.38618 * 120.67716 * 179.97438 * 3 2 1 5 5 C 1.37942 * 120.15257 * 0.02562 * 4 3 2 6 6 C 1.39095 * 119.66615 * 0.02562 * 5 4 3 7 7 C 1.47743 * 133.82497 * 179.97438 * 6 5 4 8 8 C 1.39995 * 127.40382 * 0.02867 * 7 6 5 9 9 H 1.08000 * 119.99984 * 136.87310 * 8 7 6 10 10 C 1.40606 * 120.00237 * 316.87471 * 8 7 6 11 11 N 1.30458 * 120.00371 * 157.60235 * 10 8 7 12 12 Si 1.86803 * 119.99607 * 337.60286 * 10 8 7 13 13 H 1.48502 * 109.47047 * 95.82703 * 12 10 8 14 14 H 1.48499 * 109.46832 * 215.82507 * 12 10 8 15 15 H 1.48498 * 109.47337 * 335.82923 * 12 10 8 16 16 C 1.40583 * 105.19122 * 180.02562 * 7 6 5 17 17 C 1.46381 * 125.55904 * 180.02562 * 16 7 6 18 18 O 1.21656 * 120.00007 * 5.11936 * 17 16 7 19 19 O 1.34990 * 119.99919 * 185.11622 * 17 16 7 20 20 O 1.34553 * 108.87890 * 0.02562 * 16 7 6 21 21 C 1.34900 * 111.60714 * 359.73568 * 20 16 7 22 22 H 1.09003 * 109.46911 * 90.00257 * 1 2 3 23 23 H 1.09005 * 109.47140 * 209.99992 * 1 2 3 24 24 H 1.08997 * 109.47151 * 330.00175 * 1 2 3 25 25 H 1.08000 * 119.66337 * 359.97438 * 3 2 1 26 26 H 1.07993 * 119.92556 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.16692 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00074 * 179.97438 * 11 10 8 29 29 H 0.96702 * 114.00302 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1944 0.0000 4 6 3.5820 1.2114 0.0005 5 6 4.2894 0.0272 0.0005 6 6 3.6049 -1.1837 -0.0005 7 6 4.0293 -2.5988 -0.0013 8 6 5.3388 -3.0939 -0.0006 9 1 5.6020 -3.9239 0.6383 10 6 6.3115 -2.5106 -0.8317 11 7 7.5775 -2.6417 -0.5457 12 14 5.7907 -1.5478 -2.3454 13 1 5.7383 -0.1003 -2.0176 14 1 6.7720 -1.7730 -3.4370 15 1 4.4478 -2.0046 -2.7849 16 6 2.8356 -3.3414 -0.0029 17 6 2.7419 -4.8023 -0.0036 18 8 3.7500 -5.4765 0.0912 19 8 1.5367 -5.4012 -0.1094 20 8 1.7934 -2.4904 -0.0036 21 6 2.2020 -1.2047 0.0031 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6501 2.1263 -0.0004 26 1 4.1093 2.1538 0.0009 27 1 5.3693 0.0401 0.0005 28 1 8.2485 -2.2395 -1.1193 29 1 1.5755 -6.3674 -0.1011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259362729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:09 Heat of formation + Delta-G solvation = -100.310820 kcal Electronic energy + Delta-G solvation = -17512.107352 eV Core-core repulsion = 14558.118740 eV Total energy + Delta-G solvation = -2953.988612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.78990 -40.57152 -38.68280 -36.92462 -36.18008 -34.25535 -32.45471 -30.66451 -28.16505 -27.72125 -25.10934 -23.35055 -21.94774 -21.32560 -19.46007 -19.05210 -18.11483 -17.83980 -17.10515 -16.70658 -16.29861 -15.88316 -15.63101 -15.02725 -14.49186 -14.43242 -14.14937 -14.07685 -13.56082 -13.24996 -13.14241 -12.90123 -12.58457 -12.45325 -12.34384 -12.13180 -11.73888 -11.55638 -11.25876 -10.41704 -9.42203 -9.19696 -8.97675 -6.75552 -0.27380 0.47726 0.87673 1.16348 1.26550 1.34640 1.95230 1.98600 2.07615 2.62844 2.72810 2.92438 3.81546 3.99980 4.10786 4.34118 4.39131 4.55296 4.73826 4.79802 4.86509 4.97633 5.02876 5.23549 5.40701 5.50038 5.56405 5.60989 5.62367 5.93321 5.97691 6.20057 6.39640 6.58278 7.27583 7.86844 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.013860 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.311052 B = 2019.729581 C = 3411.387022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.114 4.114 3 C -0.070 4.070 4 C -0.151 4.151 5 C -0.080 4.080 6 C -0.189 4.189 7 C 0.081 3.919 8 C -0.421 4.421 9 H 0.070 0.930 10 C 0.066 3.934 11 N -0.793 5.793 12 Si 0.935 3.065 13 H -0.213 1.213 14 H -0.253 1.253 15 H -0.278 1.278 16 C -0.260 4.260 17 C 0.550 3.450 18 O -0.557 6.557 19 O -0.507 6.507 20 O -0.203 6.203 21 C 0.071 3.929 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.180 0.820 26 H 0.164 0.836 27 H 0.118 0.882 28 H 0.309 0.691 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 10.121 -2.213 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.169 4.169 5 C -0.098 4.098 6 C -0.191 4.191 7 C 0.076 3.924 8 C -0.447 4.447 9 H 0.088 0.912 10 C -0.157 4.157 11 N -0.416 5.416 12 Si 0.754 3.246 13 H -0.136 1.136 14 H -0.177 1.177 15 H -0.202 1.202 16 C -0.306 4.306 17 C 0.404 3.596 18 O -0.455 6.455 19 O -0.319 6.319 20 O -0.109 6.109 21 C 0.022 3.978 22 H 0.095 0.905 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.197 0.803 26 H 0.182 0.818 27 H 0.136 0.864 28 H 0.120 0.880 29 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -8.061 10.273 -2.194 13.241 hybrid contribution 0.540 -1.376 -0.238 1.497 sum -7.521 8.898 -2.432 11.902 Atomic orbital electron populations 1.20696 0.88410 1.03534 1.03081 1.19342 0.97818 0.87780 1.06564 1.21276 0.93816 0.96954 0.96705 1.21334 0.94702 0.97482 1.03373 1.20817 1.00011 0.90935 0.98021 1.20308 0.94332 0.94215 1.10208 1.18964 0.92276 0.89655 0.91511 1.18874 0.91132 1.14198 1.20505 0.91166 1.26853 0.93676 0.94200 1.00939 1.69516 1.02783 1.33123 1.36221 0.85982 0.79395 0.81759 0.77417 1.13557 1.17678 1.20249 1.20475 0.85294 0.87138 1.37656 1.18608 0.80962 0.85616 0.74409 1.90869 1.37880 1.64384 1.52318 1.85039 1.31966 1.28160 1.86761 1.83617 1.33764 1.13276 1.80201 1.20149 0.92807 0.84909 0.99944 0.90476 0.93079 0.88091 0.80297 0.81844 0.86370 0.87961 0.72338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 10.01 71.24 0.71 -1.80 15 2 C -0.11 -3.78 5.89 -19.75 -0.12 -3.89 15 3 C -0.07 -1.84 9.66 22.28 0.22 -1.62 15 4 C -0.15 -4.42 10.04 22.29 0.22 -4.19 15 5 C -0.08 -3.15 7.61 22.41 0.17 -2.98 15 6 C -0.19 -9.02 5.05 -20.05 -0.10 -9.12 15 7 C 0.08 4.45 4.89 -19.77 -0.10 4.36 15 8 C -0.42 -24.53 8.78 23.27 0.20 -24.33 15 9 H 0.07 4.59 7.47 -2.91 -0.02 4.56 15 10 C 0.07 3.43 5.31 85.47 0.45 3.89 15 11 N -0.79 -40.86 13.91 21.94 0.31 -40.55 15 12 Si 0.94 40.30 24.71 68.60 1.69 42.00 15 13 H -0.21 -7.92 5.89 99.48 0.59 -7.33 15 14 H -0.25 -9.85 7.11 99.48 0.71 -9.14 15 15 H -0.28 -13.36 7.11 99.48 0.71 -12.66 15 16 C -0.26 -14.15 7.26 24.96 0.18 -13.97 15 17 C 0.55 28.19 8.27 69.94 0.58 28.77 15 18 O -0.56 -31.25 16.13 19.32 0.31 -30.94 15 19 O -0.51 -20.44 13.56 -57.43 -0.78 -21.22 15 20 O -0.20 -10.21 10.54 -10.34 -0.11 -10.32 15 21 C 0.07 3.16 7.01 22.98 0.16 3.32 15 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.05 1.43 8.09 -2.38 -0.02 1.41 15 24 H 0.10 1.75 8.08 -2.39 -0.02 1.73 15 25 H 0.18 2.83 8.06 -2.91 -0.02 2.81 15 26 H 0.16 3.39 8.06 -2.91 -0.02 3.37 15 27 H 0.12 4.69 6.56 -2.91 -0.02 4.67 15 28 H 0.31 13.75 8.29 -92.71 -0.77 12.98 15 29 H 0.42 11.79 8.98 -74.06 -0.67 11.12 15 Total: -1.00 -71.80 260.47 4.43 -67.37 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.42 Total: 15.24 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 2.59 Total: -21.58 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.31 Total: -40.55 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -0.58 Total: -62.48 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.69 Total: 42.00 kcal Total: -71.80 4.43 -67.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259362729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.940 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds