Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86805 * 119.99549 * 2 1 4 4 H 1.48501 * 109.46864 * 269.99989 * 3 2 1 5 5 H 1.48491 * 109.47418 * 30.00206 * 3 2 1 6 6 H 1.48497 * 109.46787 * 150.00552 * 3 2 1 7 7 C 1.40143 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00524 * 163.35358 * 7 2 1 9 9 C 1.40938 * 120.00110 * 343.35143 * 7 2 1 10 10 C 1.41150 * 121.21914 * 336.24590 * 9 7 2 11 11 C 1.38153 * 118.55897 * 179.97438 * 10 9 7 12 12 C 1.50702 * 118.84035 * 180.02562 * 11 10 9 13 13 C 1.52998 * 117.50108 * 343.61711 * 12 11 10 14 14 C 1.53001 * 117.49724 * 274.99352 * 12 11 10 15 15 N 1.31125 * 122.31742 * 359.97438 * 11 10 9 16 16 C 1.34640 * 122.79544 * 0.02562 * 15 11 10 17 17 C 1.40728 * 129.93539 * 180.02562 * 16 15 11 18 18 N 1.28875 * 118.90962 * 179.97438 * 17 16 15 19 19 S 1.69605 * 108.38776 * 359.97438 * 18 17 16 20 20 C 1.40647 * 118.20899 * 359.97438 * 16 15 11 21 21 H 0.97002 * 120.00550 * 359.97438 * 1 2 3 22 22 H 1.08009 * 120.71983 * 359.70557 * 10 9 7 23 23 H 1.09003 * 115.55296 * 129.32660 * 12 11 10 24 24 H 1.09000 * 117.49832 * 0.02562 * 13 12 11 25 25 H 1.09003 * 117.49963 * 145.02557 * 13 12 11 26 26 H 1.09003 * 117.49926 * 214.98238 * 14 12 11 27 27 H 1.08997 * 117.49946 * 359.97438 * 14 12 11 28 28 H 1.07998 * 120.54031 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4384 2.6527 0.7000 6 1 3.5384 1.4403 0.6999 7 6 2.0078 -1.2136 -0.0005 8 1 3.0539 -1.2331 -0.2685 9 6 1.3475 -2.4088 0.3486 10 6 0.1885 -2.3959 1.1543 11 6 -0.4149 -3.5998 1.4625 12 6 -1.6530 -3.5934 2.3218 13 6 -1.9556 -2.3208 3.1154 14 6 -1.4595 -3.5741 3.8394 15 7 0.0510 -4.7478 1.0330 16 6 1.1498 -4.8460 0.2612 17 6 1.7754 -5.9850 -0.2790 18 7 2.8330 -5.8322 -0.9994 19 16 3.1836 -4.1752 -1.0903 20 6 1.8199 -3.6620 -0.0952 21 1 -0.4851 0.8400 0.0004 22 1 -0.2151 -1.4654 1.5253 23 1 -2.5004 -4.1558 1.9296 24 1 -1.2594 -1.4880 3.0157 25 1 -3.0022 -2.0456 3.2454 26 1 -2.1798 -4.1234 4.4457 27 1 -0.4368 -3.5665 4.2163 28 1 1.3758 -6.9709 -0.0928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259378702.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = 69.411329 kcal Electronic energy + Delta-G solvation = -14962.864936 eV Core-core repulsion = 12491.281651 eV Total energy + Delta-G solvation = -2471.583285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25552 -37.06315 -35.46730 -34.10286 -31.01602 -29.20643 -26.29394 -23.95996 -23.27822 -21.92429 -21.08775 -19.42527 -17.92244 -16.46294 -15.69230 -15.42811 -15.22332 -14.60907 -14.13358 -13.65727 -13.39780 -12.89341 -12.07199 -11.75230 -11.57047 -11.54217 -11.34672 -11.03240 -10.71575 -10.55981 -10.22124 -10.06938 -9.94574 -9.74481 -9.66652 -8.91658 -8.16953 -7.77058 -7.25011 -7.11126 -4.85325 1.47235 2.35871 2.46553 2.81928 2.84968 2.89343 2.94763 3.28895 3.66592 4.22236 4.44981 4.85898 5.17790 5.38207 5.51876 5.55557 5.72419 6.00160 6.02405 6.26920 6.36278 6.47220 6.54785 6.64255 6.75499 6.89111 7.05508 7.27868 7.44342 7.69639 8.08520 8.35358 8.37700 9.24260 9.75987 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.012127 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.638601 B = 2308.390810 C = 4015.947807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.078 3.922 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.436 4.436 8 H 0.088 0.912 9 C 0.162 3.838 10 C -0.204 4.204 11 C 0.170 3.830 12 C -0.087 4.087 13 C -0.173 4.173 14 C -0.172 4.172 15 N -0.533 5.533 16 C 0.082 3.918 17 C 0.124 3.876 18 N -0.452 5.452 19 S 0.153 5.847 20 C -0.245 4.245 21 H 0.290 0.710 22 H 0.143 0.857 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 0.246 3.394 3.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.106 0.894 9 C 0.151 3.849 10 C -0.232 4.232 11 C 0.031 3.969 12 C -0.106 4.106 13 C -0.210 4.210 14 C -0.210 4.210 15 N -0.250 5.250 16 C -0.055 4.055 17 C -0.086 4.086 18 N -0.266 5.266 19 S 0.302 5.698 20 C -0.372 4.372 21 H 0.101 0.899 22 H 0.160 0.840 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.237 -0.559 2.260 2.340 hybrid contribution -0.834 1.424 0.690 1.789 sum -1.070 0.865 2.950 3.255 Atomic orbital electron populations 1.69729 1.07839 1.30414 1.30928 1.26043 0.94878 1.01888 0.91679 0.86158 0.80733 0.79435 0.79827 1.18906 1.19537 1.17945 1.19603 0.98024 0.90570 1.38386 0.89413 1.16837 0.90898 0.89021 0.88135 1.22094 0.99880 0.97909 1.03306 1.19630 0.93729 0.88649 0.94927 1.20628 0.96905 1.01427 0.91640 1.23016 1.01716 0.92405 1.03881 1.22886 1.02138 1.01671 0.94298 1.66831 1.13349 1.28517 1.16333 1.19710 0.95360 0.90634 0.99833 1.22218 0.92267 0.99523 0.94609 1.76065 1.17531 1.12163 1.20878 1.84231 1.31714 0.99261 1.54585 1.24289 1.03674 0.99173 1.10036 0.89885 0.84005 0.87457 0.88003 0.89046 0.89193 0.89125 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.64 10.92 55.56 0.61 -17.03 15 2 C 0.08 1.76 5.21 -17.32 -0.09 1.67 15 3 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 15 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 7 C -0.44 -10.69 9.07 -37.85 -0.34 -11.03 15 8 H 0.09 2.09 7.90 -52.48 -0.41 1.68 15 9 C 0.16 4.12 5.59 -106.69 -0.60 3.52 15 10 C -0.20 -4.93 8.03 -38.51 -0.31 -5.24 15 11 C 0.17 3.89 6.44 -82.92 -0.53 3.36 15 12 C -0.09 -1.61 6.19 -91.77 -0.57 -2.18 15 13 C -0.17 -2.76 9.77 -26.73 -0.26 -3.03 15 14 C -0.17 -2.71 10.23 -26.73 -0.27 -2.98 15 15 N -0.53 -12.61 10.26 -7.52 -0.08 -12.68 15 16 C 0.08 1.94 7.07 -84.79 -0.60 1.34 15 17 C 0.12 2.57 11.22 -17.85 -0.20 2.37 15 18 N -0.45 -9.58 11.96 29.79 0.36 -9.23 15 19 S 0.15 3.37 23.86 -107.50 -2.57 0.80 15 20 C -0.25 -6.05 6.54 -37.59 -0.25 -6.29 15 21 H 0.29 5.96 8.29 -40.82 -0.34 5.63 15 22 H 0.14 3.36 4.35 -52.48 -0.23 3.13 15 23 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.10 1.76 6.33 -51.93 -0.33 1.43 15 25 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.09 1.19 8.14 -51.93 -0.42 0.76 15 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 15 28 H 0.17 2.96 8.06 -52.49 -0.42 2.54 15 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -26.52 260.79 -9.02 -35.54 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.22 Total: 5.34 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -4.02 Total: -18.49 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.89 Total: -38.95 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.57 Total: 0.80 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.52 -9.02 -35.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259378702.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.952 kcal (2) G-P(sol) polarization free energy of solvation -26.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds