Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86805 * 119.99549 * 2 1 4 4 H 1.48501 * 109.46864 * 269.99989 * 3 2 1 5 5 H 1.48491 * 109.47418 * 30.00206 * 3 2 1 6 6 H 1.48497 * 109.46787 * 150.00552 * 3 2 1 7 7 C 1.40143 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00524 * 163.35358 * 7 2 1 9 9 C 1.40938 * 120.00110 * 343.35143 * 7 2 1 10 10 C 1.41150 * 121.21914 * 336.24590 * 9 7 2 11 11 C 1.38153 * 118.55897 * 179.97438 * 10 9 7 12 12 C 1.50702 * 118.84035 * 180.02562 * 11 10 9 13 13 C 1.52998 * 117.50108 * 343.61711 * 12 11 10 14 14 C 1.53001 * 117.49724 * 274.99352 * 12 11 10 15 15 N 1.31125 * 122.31742 * 359.97438 * 11 10 9 16 16 C 1.34640 * 122.79544 * 0.02562 * 15 11 10 17 17 C 1.40728 * 129.93539 * 180.02562 * 16 15 11 18 18 N 1.28875 * 118.90962 * 179.97438 * 17 16 15 19 19 S 1.69605 * 108.38776 * 359.97438 * 18 17 16 20 20 C 1.40647 * 118.20899 * 359.97438 * 16 15 11 21 21 H 0.97002 * 120.00550 * 359.97438 * 1 2 3 22 22 H 1.08009 * 120.71983 * 359.70557 * 10 9 7 23 23 H 1.09003 * 115.55296 * 129.32660 * 12 11 10 24 24 H 1.09000 * 117.49832 * 0.02562 * 13 12 11 25 25 H 1.09003 * 117.49963 * 145.02557 * 13 12 11 26 26 H 1.09003 * 117.49926 * 214.98238 * 14 12 11 27 27 H 1.08997 * 117.49946 * 359.97438 * 14 12 11 28 28 H 1.07998 * 120.54031 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4384 2.6527 0.7000 6 1 3.5384 1.4403 0.6999 7 6 2.0078 -1.2136 -0.0005 8 1 3.0539 -1.2331 -0.2685 9 6 1.3475 -2.4088 0.3486 10 6 0.1885 -2.3959 1.1543 11 6 -0.4149 -3.5998 1.4625 12 6 -1.6530 -3.5934 2.3218 13 6 -1.9556 -2.3208 3.1154 14 6 -1.4595 -3.5741 3.8394 15 7 0.0510 -4.7478 1.0330 16 6 1.1498 -4.8460 0.2612 17 6 1.7754 -5.9850 -0.2790 18 7 2.8330 -5.8322 -0.9994 19 16 3.1836 -4.1752 -1.0903 20 6 1.8199 -3.6620 -0.0952 21 1 -0.4851 0.8400 0.0004 22 1 -0.2151 -1.4654 1.5253 23 1 -2.5004 -4.1558 1.9296 24 1 -1.2594 -1.4880 3.0157 25 1 -3.0022 -2.0456 3.2454 26 1 -2.1798 -4.1234 4.4457 27 1 -0.4368 -3.5665 4.2163 28 1 1.3758 -6.9709 -0.0928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259378702.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = 55.210722 kcal Electronic energy + Delta-G solvation = -14963.480721 eV Core-core repulsion = 12491.281651 eV Total energy + Delta-G solvation = -2472.199070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98161 -38.59643 -37.09212 -35.81870 -32.80949 -30.93110 -28.10075 -25.69021 -24.88107 -23.28902 -22.72070 -21.03820 -19.65796 -18.23682 -17.37417 -17.01937 -16.90800 -16.20316 -15.66416 -15.27685 -15.04229 -14.49777 -13.73223 -13.43905 -13.21884 -13.19330 -12.90468 -12.39378 -12.35748 -12.07962 -11.90367 -11.62147 -11.55008 -11.26535 -11.16632 -10.67538 -9.97081 -9.54527 -9.00174 -8.83465 -6.69367 -0.30077 0.60278 0.72010 1.09814 1.26960 1.37656 1.50961 1.62878 2.12862 2.58289 2.95872 3.25728 3.46280 3.90494 4.06204 4.14796 4.21715 4.48101 4.65788 4.76298 4.83361 4.97762 5.02367 5.09050 5.15399 5.32001 5.38536 5.55601 5.65334 5.90223 6.26764 6.53367 6.57159 7.44166 8.07862 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.012127 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.638601 B = 2308.390810 C = 4015.947807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.044 3.956 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.255 1.255 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.133 3.867 10 C -0.223 4.223 11 C 0.164 3.836 12 C -0.115 4.115 13 C -0.161 4.161 14 C -0.152 4.152 15 N -0.541 5.541 16 C 0.067 3.933 17 C 0.131 3.869 18 N -0.449 5.449 19 S 0.157 5.843 20 C -0.280 4.280 21 H 0.301 0.699 22 H 0.141 0.859 23 H 0.119 0.881 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 0.535 4.120 4.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.179 1.179 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.250 4.250 11 C 0.024 3.976 12 C -0.134 4.134 13 C -0.198 4.198 14 C -0.190 4.190 15 N -0.259 5.259 16 C -0.070 4.070 17 C -0.079 4.079 18 N -0.262 5.262 19 S 0.306 5.694 20 C -0.407 4.407 21 H 0.113 0.887 22 H 0.158 0.842 23 H 0.137 0.863 24 H 0.101 0.899 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.096 0.904 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.919 -0.279 2.984 3.135 hybrid contribution -0.658 1.284 0.457 1.514 sum -1.577 1.006 3.442 3.917 Atomic orbital electron populations 1.69737 1.09019 1.32022 1.30327 1.26841 0.95619 1.04536 0.90696 0.85131 0.79254 0.75199 0.79944 1.18468 1.17917 1.18189 1.19828 0.98105 0.91634 1.39669 0.89853 1.17250 0.91814 0.89838 0.88822 1.22185 1.00302 0.98539 1.04005 1.20248 0.94725 0.87988 0.94641 1.20718 0.95585 1.04168 0.92897 1.23060 1.03036 0.91293 1.02419 1.22963 1.02397 1.01271 0.92329 1.66963 1.13453 1.28828 1.16673 1.20242 0.95539 0.91365 0.99895 1.22607 0.91556 1.00291 0.93440 1.76107 1.17758 1.11314 1.21052 1.84076 1.31062 0.99859 1.54379 1.24584 1.05144 0.99595 1.11329 0.88709 0.84154 0.86345 0.89861 0.85996 0.85799 0.90396 0.77150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.45 10.92 21.86 0.24 -36.21 15 2 C 0.04 1.99 5.21 85.32 0.44 2.44 15 3 Si 0.99 34.13 29.59 68.60 2.03 36.16 15 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 5 H -0.26 -8.16 7.11 99.48 0.71 -7.45 15 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 7 C -0.46 -23.30 9.07 23.39 0.21 -23.09 15 8 H 0.08 4.11 7.90 -2.91 -0.02 4.09 15 9 C 0.13 6.99 5.59 -21.20 -0.12 6.87 15 10 C -0.22 -11.02 8.03 22.96 0.18 -10.84 15 11 C 0.16 7.53 6.44 42.64 0.27 7.80 15 12 C -0.11 -4.12 6.19 -11.54 -0.07 -4.19 15 13 C -0.16 -4.87 9.77 30.59 0.30 -4.57 15 14 C -0.15 -4.45 10.23 30.60 0.31 -4.14 15 15 N -0.54 -25.62 10.26 -177.71 -1.82 -27.44 15 16 C 0.07 3.18 7.07 39.91 0.28 3.46 15 17 C 0.13 5.30 11.22 85.74 0.96 6.26 15 18 N -0.45 -18.60 11.96 -59.65 -0.71 -19.32 15 19 S 0.16 6.97 23.86 -56.49 -1.35 5.63 15 20 C -0.28 -14.13 6.54 23.56 0.15 -13.97 15 21 H 0.30 12.26 8.29 -92.71 -0.77 11.49 15 22 H 0.14 6.83 4.35 -2.91 -0.01 6.82 15 23 H 0.12 3.95 8.14 -2.39 -0.02 3.93 15 24 H 0.08 2.85 6.33 -2.39 -0.02 2.83 15 25 H 0.12 2.93 8.14 -2.39 -0.02 2.91 15 26 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 28 H 0.21 6.70 8.06 -2.91 -0.02 6.67 15 Total: -1.00 -57.50 260.79 2.52 -54.98 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.20 Total: 20.18 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 2.94 Total: -33.97 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.30 Total: -82.97 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.35 Total: 5.63 kcal Total: -57.50 2.52 -54.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259378702.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.189 kcal (2) G-P(sol) polarization free energy of solvation -57.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds