Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35666 * 116.99584 * 2 1 4 4 C 1.38106 * 119.82132 * 0.26725 * 3 2 1 5 5 C 1.38935 * 120.11774 * 180.29601 * 4 3 2 6 6 O 1.34784 * 133.15828 * 179.74372 * 5 4 3 7 7 C 1.34524 * 110.95079 * 179.97438 * 6 5 4 8 8 C 1.33930 * 110.27351 * 0.02562 * 7 6 5 9 9 C 1.41027 * 119.67479 * 359.71953 * 5 4 3 10 10 C 1.38830 * 120.44214 * 359.97438 * 9 5 4 11 11 C 1.39453 * 119.55162 * 0.02562 * 10 9 5 12 12 C 1.47447 * 120.07422 * 179.97438 * 11 10 9 13 13 O 1.21833 * 119.99613 * 179.97438 * 12 11 10 14 14 C 1.41757 * 119.99698 * 359.97438 * 12 11 10 15 15 H 1.08002 * 120.00609 * 0.02562 * 14 12 11 16 16 C 1.40319 * 119.99453 * 179.72219 * 14 12 11 17 17 N 1.30544 * 120.00179 * 0.27992 * 16 14 12 18 18 Si 1.86803 * 119.99807 * 180.27800 * 16 14 12 19 19 H 1.48506 * 109.47253 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 120.00082 * 18 16 14 21 21 H 1.48506 * 109.46902 * 240.00333 * 18 16 14 22 22 H 1.09002 * 109.46841 * 299.98846 * 1 2 3 23 23 H 1.08998 * 109.47453 * 59.99633 * 1 2 3 24 24 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.93682 * 0.02562 * 4 3 2 26 26 H 1.08002 * 124.86397 * 179.97438 * 7 6 5 27 27 H 1.08005 * 126.90743 * 180.02562 * 8 7 6 28 28 H 1.07997 * 120.21944 * 180.02562 * 10 9 5 29 29 H 0.97000 * 119.99444 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2890 2.3647 0.0056 5 6 1.9132 3.6059 -0.0006 6 8 1.4491 4.8713 -0.0019 7 6 2.4629 5.7555 -0.0083 8 6 3.6384 5.1137 -0.0120 9 6 3.3216 3.6791 -0.0066 10 6 4.0862 2.5204 -0.0058 11 6 3.4525 1.2782 0.0004 12 6 4.2533 0.0401 0.0007 13 8 3.6982 -1.0444 0.0066 14 6 5.6690 0.1118 -0.0059 15 1 6.1611 1.0732 -0.0107 16 6 6.4311 -1.0664 0.0003 17 7 5.8364 -2.2285 0.0066 18 14 8.2968 -0.9720 -0.0005 19 1 8.7204 0.4513 -0.0088 20 1 8.8267 -1.6396 1.2155 21 1 8.8263 -1.6526 -1.2096 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2108 2.3035 0.0104 26 1 2.3457 6.8291 -0.0110 27 1 4.6215 5.5609 -0.0169 28 1 5.1645 2.5806 -0.0100 29 1 6.3633 -3.0429 0.0105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259413046.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = -43.982875 kcal Electronic energy + Delta-G solvation = -17139.400163 eV Core-core repulsion = 14187.854113 eV Total energy + Delta-G solvation = -2951.546049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95208 -39.17152 -36.70043 -35.40084 -32.61677 -32.07786 -30.20627 -28.49636 -27.03317 -26.30933 -23.28116 -21.68675 -20.93868 -19.77457 -17.69115 -16.97575 -16.65898 -15.77792 -15.76344 -15.06470 -14.97816 -14.24648 -13.96191 -13.54813 -13.07116 -12.57497 -12.54687 -12.35590 -11.93709 -11.41162 -11.34861 -11.27088 -10.91489 -10.59977 -10.46018 -10.30825 -10.09728 -9.55676 -8.94036 -7.79910 -7.37654 -7.35302 -6.24203 -4.84298 1.44823 1.76384 2.74322 3.06408 3.09371 3.15566 3.19801 3.89428 3.96827 4.03947 4.62278 4.88470 5.07039 5.33538 5.40228 5.49814 5.55040 5.73672 5.81239 5.84435 5.85421 6.12310 6.25365 6.50924 6.70451 6.83856 6.90833 7.19499 7.28576 7.48075 8.01221 8.07128 8.84483 8.88330 10.37782 10.60487 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.007784 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.237036 B = 3596.107763 C = 4775.191823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.263 6.263 3 C 0.187 3.813 4 C -0.233 4.233 5 C 0.084 3.916 6 O -0.203 6.203 7 C -0.026 4.026 8 C -0.191 4.191 9 C -0.182 4.182 10 C -0.011 4.011 11 C -0.146 4.146 12 C 0.393 3.607 13 O -0.518 6.518 14 C -0.520 4.520 15 H 0.073 0.927 16 C 0.081 3.919 17 N -0.736 5.736 18 Si 0.905 3.095 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.097 0.903 25 H 0.129 0.871 26 H 0.200 0.800 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 10.973 -0.028 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.173 6.173 3 C 0.140 3.860 4 C -0.252 4.252 5 C 0.036 3.964 6 O -0.105 6.105 7 C -0.090 4.090 8 C -0.210 4.210 9 C -0.183 4.183 10 C -0.030 4.030 11 C -0.147 4.147 12 C 0.287 3.713 13 O -0.406 6.406 14 C -0.552 4.552 15 H 0.091 0.909 16 C -0.142 4.142 17 N -0.365 5.365 18 Si 0.729 3.271 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.199 1.199 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.147 0.853 26 H 0.217 0.783 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.609 10.111 -0.023 11.562 hybrid contribution 0.809 0.575 0.001 0.992 sum -4.800 10.686 -0.022 11.714 Atomic orbital electron populations 1.23087 0.80371 1.03632 1.00519 1.86552 1.19297 1.24784 1.86675 1.19021 0.91692 0.83338 0.91998 1.19585 0.99650 0.87830 1.18170 1.19268 0.92065 0.83727 1.01311 1.83921 1.35719 1.13952 1.76947 1.23676 0.85187 0.94607 1.05578 1.22466 0.98952 0.91722 1.07828 1.19905 0.93009 0.93939 1.11409 1.20805 1.00101 0.88534 0.93528 1.21504 0.90456 0.98613 1.04169 1.17888 0.88551 0.85129 0.79726 1.90560 1.73687 1.28737 1.47570 1.20906 0.92859 0.93494 1.47913 0.90887 1.25959 1.00536 0.94928 0.92794 1.69981 1.37038 0.98270 1.31250 0.86349 0.82726 0.79564 0.78471 1.18406 1.19900 1.19901 0.93196 0.93203 0.88423 0.85278 0.78332 0.82900 0.83954 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 101.05 0.99 1.29 15 2 O -0.26 -5.91 8.54 -40.66 -0.35 -6.26 15 3 C 0.19 4.18 6.70 -38.61 -0.26 3.92 15 4 C -0.23 -4.42 9.03 -39.37 -0.36 -4.78 15 5 C 0.08 1.58 7.41 -38.27 -0.28 1.29 15 6 O -0.20 -3.34 10.58 3.77 0.04 -3.30 15 7 C -0.03 -0.35 11.95 29.22 0.35 0.00 15 8 C -0.19 -2.81 11.14 -37.58 -0.42 -3.23 15 9 C -0.18 -3.44 6.38 -105.11 -0.67 -4.11 15 10 C -0.01 -0.24 9.47 -38.91 -0.37 -0.61 15 11 C -0.15 -3.56 5.90 -104.68 -0.62 -4.18 15 12 C 0.39 11.36 6.90 -34.49 -0.24 11.12 15 13 O -0.52 -16.70 13.68 -16.90 -0.23 -16.94 15 14 C -0.52 -14.37 8.85 -37.46 -0.33 -14.70 15 15 H 0.07 1.82 6.01 -52.49 -0.32 1.50 15 16 C 0.08 2.18 5.50 -17.32 -0.10 2.08 15 17 N -0.74 -21.33 11.73 55.57 0.65 -20.68 15 18 Si 0.90 19.31 29.56 -169.99 -5.03 14.28 15 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 22 H 0.05 0.67 7.63 -51.93 -0.40 0.28 15 23 H 0.05 0.67 7.65 -51.93 -0.40 0.27 15 24 H 0.10 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.13 2.06 6.23 -52.49 -0.33 1.73 15 26 H 0.20 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.15 1.80 8.06 -52.48 -0.42 1.38 15 28 H 0.14 2.83 6.19 -52.49 -0.33 2.51 15 29 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -34.55 260.72 -5.44 -39.99 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.16 Total: 0.86 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.30 Total: -11.89 kcal Atomic # 7 Polarization: -21.33 SS G_CDS: 0.65 Total: -20.68 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.54 Total: -26.49 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.55 -5.44 -39.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413046.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.990 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds