Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35666 * 116.99584 * 2 1 4 4 C 1.38106 * 119.82132 * 0.26725 * 3 2 1 5 5 C 1.38935 * 120.11774 * 180.29601 * 4 3 2 6 6 O 1.34784 * 133.15828 * 179.74372 * 5 4 3 7 7 C 1.34524 * 110.95079 * 179.97438 * 6 5 4 8 8 C 1.33930 * 110.27351 * 0.02562 * 7 6 5 9 9 C 1.41027 * 119.67479 * 359.71953 * 5 4 3 10 10 C 1.38830 * 120.44214 * 359.97438 * 9 5 4 11 11 C 1.39453 * 119.55162 * 0.02562 * 10 9 5 12 12 C 1.47447 * 120.07422 * 179.97438 * 11 10 9 13 13 O 1.21833 * 119.99613 * 179.97438 * 12 11 10 14 14 C 1.41757 * 119.99698 * 359.97438 * 12 11 10 15 15 H 1.08002 * 120.00609 * 0.02562 * 14 12 11 16 16 C 1.40319 * 119.99453 * 179.72219 * 14 12 11 17 17 N 1.30544 * 120.00179 * 0.27992 * 16 14 12 18 18 Si 1.86803 * 119.99807 * 180.27800 * 16 14 12 19 19 H 1.48506 * 109.47253 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 120.00082 * 18 16 14 21 21 H 1.48506 * 109.46902 * 240.00333 * 18 16 14 22 22 H 1.09002 * 109.46841 * 299.98846 * 1 2 3 23 23 H 1.08998 * 109.47453 * 59.99633 * 1 2 3 24 24 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.93682 * 0.02562 * 4 3 2 26 26 H 1.08002 * 124.86397 * 179.97438 * 7 6 5 27 27 H 1.08005 * 126.90743 * 180.02562 * 8 7 6 28 28 H 1.07997 * 120.21944 * 180.02562 * 10 9 5 29 29 H 0.97000 * 119.99444 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2890 2.3647 0.0056 5 6 1.9132 3.6059 -0.0006 6 8 1.4491 4.8713 -0.0019 7 6 2.4629 5.7555 -0.0083 8 6 3.6384 5.1137 -0.0120 9 6 3.3216 3.6791 -0.0066 10 6 4.0862 2.5204 -0.0058 11 6 3.4525 1.2782 0.0004 12 6 4.2533 0.0401 0.0007 13 8 3.6982 -1.0444 0.0066 14 6 5.6690 0.1118 -0.0059 15 1 6.1611 1.0732 -0.0107 16 6 6.4311 -1.0664 0.0003 17 7 5.8364 -2.2285 0.0066 18 14 8.2968 -0.9720 -0.0005 19 1 8.7204 0.4513 -0.0088 20 1 8.8267 -1.6396 1.2155 21 1 8.8263 -1.6526 -1.2096 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2108 2.3035 0.0104 26 1 2.3457 6.8291 -0.0110 27 1 4.6215 5.5609 -0.0169 28 1 5.1645 2.5806 -0.0100 29 1 6.3633 -3.0429 0.0105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259413046.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = -67.004625 kcal Electronic energy + Delta-G solvation = -17140.398461 eV Core-core repulsion = 14187.854113 eV Total energy + Delta-G solvation = -2952.544347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.27540 -40.72824 -38.60970 -37.09551 -34.71348 -33.37936 -31.87747 -29.88681 -28.80839 -27.86058 -24.93787 -23.17956 -22.25471 -21.56061 -19.14869 -18.60146 -18.21126 -17.66753 -17.11911 -16.60072 -16.45970 -15.79969 -15.45540 -15.18438 -14.76762 -14.25203 -14.09243 -13.69058 -13.55136 -13.20046 -13.05497 -12.73756 -12.64529 -12.20482 -12.03397 -11.90804 -11.86460 -10.96977 -10.83262 -9.50862 -9.40366 -8.79366 -8.28673 -7.01868 -0.01748 0.18636 1.38406 1.39598 1.52040 1.58165 1.80928 2.20698 2.23467 2.51796 2.76668 3.59612 3.76100 3.79107 3.97164 4.07662 4.24034 4.35398 4.39758 4.55379 4.64565 4.74824 4.81101 5.09235 5.13310 5.22459 5.36578 5.55248 5.63074 5.99351 6.15471 6.52020 6.74262 6.85627 8.32541 8.55110 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.007784 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.237036 B = 3596.107763 C = 4775.191823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.166 3.834 4 C -0.220 4.220 5 C 0.076 3.924 6 O -0.203 6.203 7 C 0.003 3.997 8 C -0.206 4.206 9 C -0.193 4.193 10 C -0.009 4.009 11 C -0.194 4.194 12 C 0.370 3.630 13 O -0.572 6.572 14 C -0.548 4.548 15 H 0.093 0.907 16 C 0.023 3.977 17 N -0.790 5.790 18 Si 0.996 3.004 19 H -0.243 1.243 20 H -0.265 1.265 21 H -0.265 1.265 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.160 0.840 26 H 0.259 0.741 27 H 0.184 0.816 28 H 0.146 0.854 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 14.556 -0.036 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.220 6.220 3 C 0.118 3.882 4 C -0.239 4.239 5 C 0.028 3.972 6 O -0.105 6.105 7 C -0.060 4.060 8 C -0.225 4.225 9 C -0.194 4.194 10 C -0.028 4.028 11 C -0.196 4.196 12 C 0.268 3.732 13 O -0.464 6.464 14 C -0.578 4.578 15 H 0.111 0.889 16 C -0.195 4.195 17 N -0.419 5.419 18 Si 0.814 3.186 19 H -0.165 1.165 20 H -0.190 1.190 21 H -0.190 1.190 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.177 0.823 26 H 0.275 0.725 27 H 0.201 0.799 28 H 0.163 0.837 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.178 13.733 -0.031 14.677 hybrid contribution 0.534 -0.358 0.003 0.642 sum -4.644 13.375 -0.028 14.158 Atomic orbital electron populations 1.23424 0.77296 1.05265 1.02401 1.86477 1.22738 1.25723 1.87059 1.19058 0.91342 0.84405 0.93350 1.19715 1.00856 0.86997 1.16322 1.19411 0.92190 0.84744 1.00835 1.83974 1.36855 1.13113 1.76575 1.24829 0.83626 0.96248 1.01309 1.22827 1.01321 0.89158 1.09180 1.20283 0.93193 0.95469 1.10485 1.20767 1.00392 0.88429 0.93167 1.21188 0.91792 0.98017 1.08591 1.18575 0.89859 0.86127 0.78642 1.90491 1.74799 1.30992 1.50146 1.21417 0.93180 0.94991 1.48236 0.88860 1.27248 1.07043 0.93931 0.91266 1.70134 1.40008 0.99571 1.32229 0.85006 0.74213 0.80536 0.78849 1.16524 1.18996 1.18996 0.91178 0.91186 0.87137 0.82263 0.72520 0.79888 0.83664 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.80 113.37 1.11 1.43 15 2 O -0.31 -14.62 8.54 -68.82 -0.59 -15.21 15 3 C 0.17 7.70 6.70 22.90 0.15 7.85 15 4 C -0.22 -8.19 9.03 22.41 0.20 -7.99 15 5 C 0.08 2.72 7.41 23.12 0.17 2.89 15 6 O -0.20 -5.83 10.58 -9.41 -0.10 -5.93 15 7 C 0.00 0.06 11.95 66.84 0.80 0.86 15 8 C -0.21 -5.23 11.14 23.56 0.26 -4.97 15 9 C -0.19 -7.02 6.38 -20.18 -0.13 -7.15 15 10 C -0.01 -0.40 9.47 22.70 0.22 -0.18 15 11 C -0.19 -10.00 5.90 -19.90 -0.12 -10.12 15 12 C 0.37 22.80 6.90 25.57 0.18 22.97 15 13 O -0.57 -39.72 13.68 16.23 0.22 -39.50 15 14 C -0.55 -31.53 8.85 23.65 0.21 -31.32 15 15 H 0.09 4.76 6.01 -2.91 -0.02 4.74 15 16 C 0.02 1.30 5.50 85.39 0.47 1.77 15 17 N -0.79 -48.01 11.73 21.88 0.26 -47.75 15 18 Si 1.00 40.02 29.56 68.60 2.03 42.05 15 19 H -0.24 -8.94 7.11 99.48 0.71 -8.23 15 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 22 H 0.07 1.84 7.63 -2.39 -0.02 1.82 15 23 H 0.07 1.84 7.65 -2.39 -0.02 1.82 15 24 H 0.11 3.03 8.14 -2.38 -0.02 3.01 15 25 H 0.16 4.76 6.23 -2.91 -0.02 4.74 15 26 H 0.26 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.18 3.44 8.06 -2.91 -0.02 3.42 15 28 H 0.15 5.89 6.19 -2.91 -0.02 5.87 15 29 H 0.28 15.18 8.29 -92.71 -0.77 14.41 15 Total: -1.00 -82.17 260.72 6.54 -75.63 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.20 Total: 14.67 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 3.52 Total: -23.95 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.26 Total: -47.75 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -0.47 Total: -60.64 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -82.17 6.54 -75.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413046.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.627 kcal (2) G-P(sol) polarization free energy of solvation -82.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds