Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 O 1.21425 * 120.00095 * 359.97438 * 10 9 7 12 12 C 1.41598 * 120.00235 * 180.02562 * 10 9 7 13 13 C 1.35456 * 123.19252 * 359.70786 * 12 10 9 14 14 S 1.69998 * 112.05939 * 179.84853 * 13 12 10 15 15 C 1.75792 * 93.14148 * 0.35635 * 14 13 12 16 16 C 1.39879 * 130.31703 * 179.77969 * 15 14 13 17 17 C 1.37495 * 120.34218 * 180.02562 * 16 15 14 18 18 C 1.38732 * 120.19916 * 359.97438 * 17 16 15 19 19 C 1.37315 * 120.29672 * 359.97438 * 18 17 16 20 20 C 1.39333 * 110.03251 * 359.80224 * 15 14 13 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 23 23 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 24 24 H 1.08004 * 123.97309 * 359.97438 * 13 12 10 25 25 H 1.07995 * 119.83087 * 0.04702 * 16 15 14 26 26 H 1.07999 * 119.90612 * 179.97438 * 17 16 15 27 27 H 1.07996 * 119.85222 * 179.97438 * 18 17 16 28 28 H 1.08003 * 119.85110 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 8 3.4241 -3.4227 -0.0030 12 6 1.7584 -4.9796 -0.0045 13 6 0.4425 -5.3010 0.0005 14 16 0.1960 -6.9830 -0.0074 15 6 1.9188 -7.3328 -0.0072 16 6 2.5935 -8.5581 -0.0080 17 6 3.9680 -8.5941 -0.0071 18 6 4.6970 -7.4138 -0.0059 19 6 4.0523 -6.2014 -0.0062 20 6 2.6470 -6.1449 -0.0055 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6247 -2.5562 -0.8920 24 1 -0.3563 -4.5741 0.0065 25 1 2.0320 -9.4806 -0.0096 26 1 4.4817 -9.5441 -0.0072 27 1 5.7764 -7.4487 -0.0048 28 1 4.6270 -5.2870 -0.0057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259430555.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -0.777490 kcal Electronic energy + Delta-G solvation = -14528.635956 eV Core-core repulsion = 12021.716304 eV Total energy + Delta-G solvation = -2506.919652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78653 -38.01007 -34.80622 -32.96626 -30.82913 -30.08214 -28.34012 -25.14434 -23.43633 -22.55063 -21.41509 -18.32094 -17.82541 -16.49515 -15.57038 -15.54484 -15.16899 -14.51138 -14.32257 -14.07455 -13.58405 -13.16583 -13.15448 -12.42337 -12.09245 -11.70382 -11.48330 -11.32379 -11.06690 -10.80718 -10.63396 -10.60152 -10.01644 -9.46553 -9.28756 -8.52466 -8.50258 -8.44573 -7.59835 -6.07283 -4.07368 0.68209 1.24793 1.54789 1.80903 2.03390 3.33298 3.38764 3.45504 3.51074 3.99736 4.44006 4.69380 4.83393 4.98776 5.27687 5.30937 5.37279 5.49229 5.70405 5.73204 5.96132 6.13746 6.32057 6.44862 6.57340 6.73324 6.98248 7.19492 7.31363 7.92697 8.21268 8.65973 9.01989 9.57591 11.05030 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.005844 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.827760 B = 4789.692055 C = 5529.373819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.073 0.927 9 C -0.021 4.021 10 C 0.403 3.597 11 O -0.460 6.460 12 C -0.164 4.164 13 C -0.163 4.163 14 S 0.153 5.847 15 C -0.165 4.165 16 C -0.086 4.086 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.069 4.069 20 C -0.041 4.041 21 H 0.262 0.738 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.184 0.816 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -17.152 -0.005 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.058 4.058 10 C 0.281 3.719 11 O -0.338 6.338 12 C -0.179 4.179 13 C -0.299 4.299 14 S 0.420 5.580 15 C -0.280 4.280 16 C -0.108 4.108 17 C -0.132 4.132 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.048 4.048 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.201 0.799 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.791 -17.756 -0.004 17.773 hybrid contribution 1.362 1.864 -0.005 2.309 sum 2.153 -15.892 -0.009 16.037 Atomic orbital electron populations 1.69948 1.06053 1.26906 1.51081 1.25000 0.94892 0.99462 0.95113 0.86467 0.79893 0.82776 0.78191 1.20585 1.21242 1.19677 1.21178 0.94195 0.89512 1.50346 0.90857 1.19545 0.94945 0.91913 0.99391 1.21564 0.91065 0.88419 0.70835 1.90352 1.19211 1.87595 1.36605 1.20165 0.92263 0.96785 1.08670 1.25697 1.00850 1.01358 1.01998 1.82725 1.01877 0.98351 1.75035 1.22792 0.97685 0.97428 1.10070 1.20386 0.94235 0.94798 1.01407 1.20982 0.93288 0.98408 1.00536 1.21043 1.00065 0.92083 1.01072 1.21336 0.92277 0.99117 0.96177 1.19097 0.94200 0.90527 1.00990 0.92894 0.92991 0.92988 0.79875 0.85800 0.85518 0.85493 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 15 7 C -0.51 -14.87 8.92 -34.44 -0.31 -15.17 15 8 H 0.07 2.18 6.75 -52.49 -0.35 1.83 15 9 C -0.02 -0.54 4.26 -29.03 -0.12 -0.66 15 10 C 0.40 9.29 6.94 -33.03 -0.23 9.06 15 11 O -0.46 -11.51 13.85 5.43 0.08 -11.43 15 12 C -0.16 -3.14 5.82 -106.26 -0.62 -3.76 15 13 C -0.16 -2.62 10.15 29.74 0.30 -2.32 15 14 S 0.15 1.99 22.97 -107.50 -2.47 -0.48 15 15 C -0.16 -2.44 6.45 -38.56 -0.25 -2.69 15 16 C -0.09 -1.04 10.06 -39.24 -0.39 -1.44 15 17 C -0.11 -1.26 10.02 -39.67 -0.40 -1.65 15 18 C -0.12 -1.57 10.01 -39.73 -0.40 -1.97 15 19 C -0.07 -1.14 9.54 -39.01 -0.37 -1.51 15 20 C -0.04 -0.72 6.01 -105.23 -0.63 -1.36 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.05 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.05 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.18 2.76 7.49 -52.48 -0.39 2.37 15 25 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 26 H 0.13 1.01 8.06 -52.49 -0.42 0.59 15 27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.14 2.55 6.40 -52.48 -0.34 2.21 15 LS Contribution 264.02 15.07 3.98 3.98 Total: -1.00 -31.71 264.02 -8.55 -40.26 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -2.33 Total: -1.80 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.52 Total: -21.97 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.47 Total: -0.48 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.71 -8.55 -40.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259430555.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.481 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds