Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 O 1.21425 * 120.00095 * 359.97438 * 10 9 7 12 12 C 1.41598 * 120.00235 * 180.02562 * 10 9 7 13 13 C 1.35456 * 123.19252 * 359.70786 * 12 10 9 14 14 S 1.69998 * 112.05939 * 179.84853 * 13 12 10 15 15 C 1.75792 * 93.14148 * 0.35635 * 14 13 12 16 16 C 1.39879 * 130.31703 * 179.77969 * 15 14 13 17 17 C 1.37495 * 120.34218 * 180.02562 * 16 15 14 18 18 C 1.38732 * 120.19916 * 359.97438 * 17 16 15 19 19 C 1.37315 * 120.29672 * 359.97438 * 18 17 16 20 20 C 1.39333 * 110.03251 * 359.80224 * 15 14 13 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 23 23 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 24 24 H 1.08004 * 123.97309 * 359.97438 * 13 12 10 25 25 H 1.07995 * 119.83087 * 0.04702 * 16 15 14 26 26 H 1.07999 * 119.90612 * 179.97438 * 17 16 15 27 27 H 1.07996 * 119.85222 * 179.97438 * 18 17 16 28 28 H 1.08003 * 119.85110 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 8 3.4241 -3.4227 -0.0030 12 6 1.7584 -4.9796 -0.0045 13 6 0.4425 -5.3010 0.0005 14 16 0.1960 -6.9830 -0.0074 15 6 1.9188 -7.3328 -0.0072 16 6 2.5935 -8.5581 -0.0080 17 6 3.9680 -8.5941 -0.0071 18 6 4.6970 -7.4138 -0.0059 19 6 4.0523 -6.2014 -0.0062 20 6 2.6470 -6.1449 -0.0055 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6247 -2.5562 -0.8920 24 1 -0.3563 -4.5741 0.0065 25 1 2.0320 -9.4806 -0.0096 26 1 4.4817 -9.5441 -0.0072 27 1 5.7764 -7.4487 -0.0048 28 1 4.6270 -5.2870 -0.0057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259430555.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -19.087685 kcal Electronic energy + Delta-G solvation = -14529.429946 eV Core-core repulsion = 12021.716304 eV Total energy + Delta-G solvation = -2507.713642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12548 -39.49288 -36.11674 -35.14209 -31.88413 -31.68697 -29.95142 -26.84551 -25.06886 -23.65764 -22.80094 -19.78773 -19.08025 -18.49225 -17.14460 -16.96028 -16.43052 -16.05004 -16.00395 -15.42243 -15.07553 -14.52845 -14.47883 -14.13265 -13.64922 -13.25186 -12.89496 -12.77868 -12.61851 -12.51542 -12.28822 -12.09435 -11.69810 -11.47323 -10.66179 -10.59402 -10.29363 -9.61231 -8.70139 -8.28299 -6.36461 -0.59473 0.17011 0.44559 0.54763 0.82735 1.36725 1.37701 1.50252 2.02941 2.37696 2.77810 3.06516 3.45111 3.65182 3.98549 4.11584 4.30923 4.40381 4.50446 4.64748 4.73745 4.88083 5.06972 5.15158 5.22552 5.26221 5.45613 5.55040 5.68271 5.95094 6.09800 6.73971 6.87200 7.32331 8.83827 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.005844 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.827760 B = 4789.692055 C = 5529.373819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.055 0.945 9 C -0.017 4.017 10 C 0.407 3.593 11 O -0.497 6.497 12 C -0.210 4.210 13 C -0.160 4.160 14 S 0.250 5.750 15 C -0.188 4.188 16 C -0.079 4.079 17 C -0.102 4.102 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.069 4.069 21 H 0.268 0.732 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.187 0.813 25 H 0.163 0.837 26 H 0.172 0.828 27 H 0.153 0.847 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -19.878 -0.029 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.054 4.054 10 C 0.287 3.713 11 O -0.377 6.377 12 C -0.226 4.226 13 C -0.297 4.297 14 S 0.519 5.481 15 C -0.303 4.303 16 C -0.100 4.100 17 C -0.123 4.123 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.075 4.075 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.204 0.796 25 H 0.180 0.820 26 H 0.189 0.811 27 H 0.170 0.830 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.424 -20.508 -0.030 20.512 hybrid contribution 1.402 2.554 0.003 2.913 sum 1.826 -17.954 -0.027 18.047 Atomic orbital electron populations 1.70024 1.07152 1.28108 1.51050 1.25803 0.95879 1.02773 0.94351 0.85475 0.78513 0.78595 0.78646 1.19585 1.19712 1.19880 1.21423 0.93721 0.91649 1.51473 0.92720 1.19412 0.95149 0.92285 0.98557 1.21431 0.90011 0.89911 0.69923 1.90324 1.20125 1.88328 1.38914 1.19808 0.93979 0.95353 1.13454 1.25980 0.99870 1.04604 0.99290 1.82305 0.99812 0.93923 1.72098 1.23169 0.98884 0.97541 1.10729 1.20926 0.94945 0.94956 0.99221 1.21501 0.93191 0.99336 0.98238 1.21396 1.01541 0.91347 0.98749 1.21292 0.92289 0.99697 0.99712 1.19124 0.94756 0.90877 1.02739 0.92345 0.93784 0.93783 0.79619 0.81960 0.81060 0.82980 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.29 21.45 0.28 -54.71 15 2 C 0.01 0.62 5.46 84.66 0.46 1.09 15 3 Si 0.96 46.09 29.54 68.60 2.03 48.12 15 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 15 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.27 -13.09 7.11 99.48 0.71 -12.39 15 7 C -0.54 -33.07 8.92 25.60 0.23 -32.84 15 8 H 0.05 3.45 6.75 -2.91 -0.02 3.43 15 9 C -0.02 -0.92 4.26 29.10 0.12 -0.80 15 10 C 0.41 20.12 6.94 26.51 0.18 20.31 15 11 O -0.50 -26.96 13.85 -3.48 -0.05 -27.01 15 12 C -0.21 -8.43 5.82 -20.93 -0.12 -8.55 15 13 C -0.16 -5.16 10.15 67.18 0.68 -4.48 15 14 S 0.25 5.83 22.97 -56.49 -1.30 4.53 15 15 C -0.19 -5.15 6.45 22.93 0.15 -5.00 15 16 C -0.08 -1.57 10.06 22.49 0.23 -1.34 15 17 C -0.10 -1.86 10.02 22.21 0.22 -1.64 15 18 C -0.11 -2.65 10.01 22.17 0.22 -2.43 15 19 C -0.11 -3.74 9.54 22.64 0.22 -3.53 15 20 C -0.07 -2.46 6.01 -20.26 -0.12 -2.58 15 21 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 22 H 0.04 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.04 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.19 5.69 7.49 -2.91 -0.02 5.67 15 25 H 0.16 1.99 8.06 -2.91 -0.02 1.96 15 26 H 0.17 1.64 8.06 -2.91 -0.02 1.62 15 27 H 0.15 2.73 8.06 -2.91 -0.02 2.70 15 28 H 0.11 4.42 6.40 -2.91 -0.02 4.40 15 Total: -1.00 -72.60 264.02 4.62 -67.98 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.18 Total: 2.88 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.47 Total: -41.80 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.30 Total: 4.53 kcal Total: -72.60 4.62 -67.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259430555.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.897 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds