Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47064 * 269.99716 * 3 2 1 5 5 H 1.48502 * 109.47417 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47394 * 149.99791 * 3 2 1 7 7 C 1.37874 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.33841 * 122.08580 * 124.99520 * 10 9 7 12 12 S 1.76255 * 108.19892 * 179.97438 * 11 10 9 13 13 C 1.76182 * 89.82925 * 0.02562 * 12 11 10 14 14 C 1.47859 * 125.46940 * 179.97438 * 13 12 11 15 15 C 1.39971 * 120.92296 * 0.02562 * 14 13 12 16 16 C 1.37935 * 118.99261 * 179.97438 * 15 14 13 17 17 N 1.31944 * 120.90187 * 359.97438 * 16 15 14 18 18 C 1.31941 * 122.05461 * 0.02562 * 17 16 15 19 19 C 1.37935 * 120.90412 * 359.97438 * 18 17 16 20 20 N 1.30227 * 109.06021 * 0.22569 * 13 12 11 21 21 H 0.97001 * 119.99550 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47629 * 59.99675 * 9 7 2 23 23 H 1.09004 * 109.47089 * 299.99063 * 9 7 2 24 24 H 1.07998 * 125.89841 * 359.97438 * 11 10 9 25 25 H 1.07994 * 120.50601 * 359.95774 * 15 14 13 26 26 H 1.07999 * 119.55234 * 179.97438 * 16 15 14 27 27 H 1.07999 * 119.54611 * 179.97438 * 18 17 16 28 28 H 1.07997 * 120.50378 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.1978 -4.6076 0.9295 12 16 3.4935 -5.7510 0.5825 13 6 3.9608 -4.7885 -0.8172 14 6 5.0749 -5.0987 -1.7385 15 6 5.8702 -6.2348 -1.5486 16 6 6.8988 -6.4862 -2.4326 17 7 7.1363 -5.6737 -3.4447 18 6 6.4112 -4.5926 -3.6598 19 6 5.3630 -4.2650 -2.8253 20 7 3.1708 -3.7572 -0.9071 21 1 -0.4849 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 1.4985 -4.6728 1.7499 25 1 5.6815 -6.9043 -0.7225 26 1 7.5183 -7.3600 -2.2944 27 1 6.6417 -3.9555 -4.5008 28 1 4.7740 -3.3783 -3.0072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259440133.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = 72.582054 kcal Electronic energy + Delta-G solvation = -14279.824398 eV Core-core repulsion = 11808.378605 eV Total energy + Delta-G solvation = -2471.445793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14218 -39.00010 -33.78753 -32.78561 -31.31169 -30.21642 -27.62265 -25.40468 -23.57019 -23.41450 -21.54586 -18.94394 -17.79906 -16.62682 -16.05735 -15.88489 -15.66240 -14.73268 -14.35932 -14.17222 -13.72688 -13.59023 -12.89786 -12.69589 -12.13028 -11.70414 -11.64878 -11.32319 -10.80778 -10.59329 -10.19318 -9.79884 -9.58615 -9.43142 -9.23185 -9.18747 -8.94656 -8.47552 -7.90191 -6.07935 -4.09479 0.39743 1.09949 1.63171 1.75171 2.08125 3.30112 3.35555 3.38871 3.46937 3.89634 4.09547 4.39348 4.43237 4.82622 4.97178 5.10189 5.26869 5.36912 5.53950 5.72700 5.80963 5.93385 6.08721 6.23009 6.60606 6.83717 7.34795 7.44089 7.88038 7.88898 8.18287 8.39657 8.93443 9.53517 11.03038 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.006255 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.525392 B = 4475.605235 C = 5376.542519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.082 3.918 10 C 0.111 3.889 11 C -0.248 4.248 12 S 0.035 5.965 13 C 0.082 3.918 14 C 0.038 3.962 15 C -0.160 4.160 16 C 0.099 3.901 17 N -0.486 5.486 18 C 0.099 3.901 19 C -0.130 4.130 20 N -0.419 5.419 21 H 0.262 0.738 22 H 0.041 0.959 23 H 0.038 0.962 24 H 0.176 0.824 25 H 0.136 0.864 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 -12.398 -1.967 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.020 4.020 11 C -0.386 4.386 12 S 0.289 5.711 13 C -0.193 4.193 14 C 0.026 3.974 15 C -0.182 4.182 16 C -0.058 4.058 17 N -0.196 5.196 18 C -0.057 4.057 19 C -0.153 4.153 20 N -0.133 5.133 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.194 0.806 25 H 0.153 0.847 26 H 0.176 0.824 27 H 0.178 0.822 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.390 -13.033 -2.417 16.842 hybrid contribution -0.987 1.782 0.810 2.192 sum 9.403 -11.252 -1.606 14.752 Atomic orbital electron populations 1.69944 1.05998 1.26915 1.50743 1.24978 0.94898 0.99279 0.95212 0.86496 0.79738 0.82998 0.78232 1.20505 1.21182 1.19902 1.20977 0.93162 0.89568 1.50623 0.92279 1.18092 0.91071 0.87884 0.98743 1.21191 0.94999 0.97185 0.88638 1.26922 1.04922 0.99216 1.07582 1.84399 1.29590 1.30102 1.27001 1.25656 1.00371 0.95106 0.98134 1.18220 0.91689 0.94488 0.93023 1.22161 0.97013 0.97444 1.01596 1.22582 0.95051 0.98090 0.90055 1.67630 1.28125 1.04280 1.19577 1.22749 0.91100 0.93556 0.98333 1.22423 0.98345 1.00646 0.93849 1.66351 1.03719 1.17214 1.26027 0.92795 0.94073 0.94341 0.80629 0.84665 0.82422 0.82193 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.50 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.50 -14.18 8.97 -34.44 -0.31 -14.49 15 8 H 0.06 1.68 7.72 -52.48 -0.41 1.28 15 9 C 0.08 2.09 5.45 -29.03 -0.16 1.93 15 10 C 0.11 2.44 5.99 -84.41 -0.51 1.94 15 11 C -0.25 -4.54 11.02 29.19 0.32 -4.22 15 12 S 0.04 0.54 22.52 -107.50 -2.42 -1.88 15 13 C 0.08 1.46 7.37 -14.30 -0.11 1.36 15 14 C 0.04 0.57 5.91 -104.66 -0.62 -0.05 15 15 C -0.16 -1.94 9.69 -39.04 -0.38 -2.32 15 16 C 0.10 1.10 11.17 -17.61 -0.20 0.91 15 17 N -0.49 -6.25 10.35 -13.36 -0.14 -6.39 15 18 C 0.10 1.23 11.17 -17.62 -0.20 1.03 15 19 C -0.13 -1.86 9.77 -39.04 -0.38 -2.24 15 20 N -0.42 -8.96 10.01 -7.54 -0.08 -9.03 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.92 15 22 H 0.04 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.04 0.99 8.01 -51.93 -0.42 0.57 15 24 H 0.18 2.80 8.06 -52.49 -0.42 2.38 15 25 H 0.14 1.37 7.43 -52.49 -0.39 0.98 15 26 H 0.16 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.16 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.15 2.28 7.91 -52.49 -0.42 1.86 15 LS Contribution 270.68 15.07 4.08 4.08 Total: -1.00 -30.99 270.68 -7.92 -38.91 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -2.45 Total: -2.20 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.63 Total: -14.64 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.52 Total: -40.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.42 Total: -1.88 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.99 -7.92 -38.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259440133.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.487 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds