Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47064 * 269.99716 * 3 2 1 5 5 H 1.48502 * 109.47417 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47394 * 149.99791 * 3 2 1 7 7 C 1.37874 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.33841 * 122.08580 * 124.99520 * 10 9 7 12 12 S 1.76255 * 108.19892 * 179.97438 * 11 10 9 13 13 C 1.76182 * 89.82925 * 0.02562 * 12 11 10 14 14 C 1.47859 * 125.46940 * 179.97438 * 13 12 11 15 15 C 1.39971 * 120.92296 * 0.02562 * 14 13 12 16 16 C 1.37935 * 118.99261 * 179.97438 * 15 14 13 17 17 N 1.31944 * 120.90187 * 359.97438 * 16 15 14 18 18 C 1.31941 * 122.05461 * 0.02562 * 17 16 15 19 19 C 1.37935 * 120.90412 * 359.97438 * 18 17 16 20 20 N 1.30227 * 109.06021 * 0.22569 * 13 12 11 21 21 H 0.97001 * 119.99550 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47629 * 59.99675 * 9 7 2 23 23 H 1.09004 * 109.47089 * 299.99063 * 9 7 2 24 24 H 1.07998 * 125.89841 * 359.97438 * 11 10 9 25 25 H 1.07994 * 120.50601 * 359.95774 * 15 14 13 26 26 H 1.07999 * 119.55234 * 179.97438 * 16 15 14 27 27 H 1.07999 * 119.54611 * 179.97438 * 18 17 16 28 28 H 1.07997 * 120.50378 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.1978 -4.6076 0.9295 12 16 3.4935 -5.7510 0.5825 13 6 3.9608 -4.7885 -0.8172 14 6 5.0749 -5.0987 -1.7385 15 6 5.8702 -6.2348 -1.5486 16 6 6.8988 -6.4862 -2.4326 17 7 7.1363 -5.6737 -3.4447 18 6 6.4112 -4.5926 -3.6598 19 6 5.3630 -4.2650 -2.8253 20 7 3.1708 -3.7572 -0.9071 21 1 -0.4849 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 1.4985 -4.6728 1.7499 25 1 5.6815 -6.9043 -0.7225 26 1 7.5183 -7.3600 -2.2944 27 1 6.6417 -3.9555 -4.5008 28 1 4.7740 -3.3783 -3.0072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259440133.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = 53.087787 kcal Electronic energy + Delta-G solvation = -14280.669733 eV Core-core repulsion = 11808.378605 eV Total energy + Delta-G solvation = -2472.291127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.23234 -40.39237 -35.48348 -34.36913 -32.29183 -31.83595 -29.40558 -26.70566 -25.39422 -24.47649 -22.87022 -20.37098 -19.15320 -18.47060 -17.54525 -16.93681 -16.67230 -16.61556 -15.76509 -15.55215 -14.79518 -14.65453 -14.51656 -14.03148 -14.00670 -13.60149 -13.16158 -12.71397 -12.66721 -12.39180 -11.74761 -11.62444 -11.25021 -10.69925 -10.62385 -10.53369 -10.29257 -10.17395 -9.32310 -8.23647 -6.33366 -0.83425 0.14628 0.30665 0.51395 0.65269 1.37371 1.38700 1.49684 1.97672 2.40213 2.85115 2.87203 3.09696 3.54735 3.84452 3.97959 4.04086 4.14667 4.34402 4.51472 4.58654 4.85238 4.88160 5.11777 5.17291 5.31578 5.41692 5.65430 5.69350 6.11850 6.74319 6.89813 6.93816 7.33661 8.87177 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.006255 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.525392 B = 4475.605235 C = 5376.542519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.048 0.952 9 C 0.089 3.911 10 C 0.076 3.924 11 C -0.256 4.256 12 S 0.138 5.862 13 C 0.072 3.928 14 C 0.010 3.990 15 C -0.150 4.150 16 C 0.106 3.894 17 N -0.497 5.497 18 C 0.103 3.897 19 C -0.146 4.146 20 N -0.467 5.467 21 H 0.266 0.734 22 H 0.008 0.992 23 H 0.027 0.973 24 H 0.195 0.805 25 H 0.159 0.841 26 H 0.199 0.801 27 H 0.184 0.816 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.755 -14.099 -1.552 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.050 3.950 10 C -0.055 4.055 11 C -0.394 4.394 12 S 0.394 5.606 13 C -0.202 4.202 14 C -0.002 4.002 15 C -0.172 4.172 16 C -0.050 4.050 17 N -0.207 5.207 18 C -0.053 4.053 19 C -0.170 4.170 20 N -0.182 5.182 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.045 0.955 24 H 0.212 0.788 25 H 0.177 0.823 26 H 0.216 0.784 27 H 0.201 0.799 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.679 -14.751 -1.999 19.553 hybrid contribution -1.605 2.130 0.669 2.750 sum 11.074 -12.621 -1.330 16.843 Atomic orbital electron populations 1.70052 1.07409 1.27980 1.51445 1.25838 0.95794 1.02849 0.94688 0.85463 0.78518 0.78668 0.78490 1.19877 1.20084 1.19453 1.21225 0.92825 0.91188 1.50640 0.93360 1.17736 0.91486 0.89243 0.96537 1.20657 0.95957 0.97773 0.91121 1.27184 1.06159 0.99251 1.06807 1.83897 1.26166 1.26655 1.23903 1.26152 1.00036 0.94674 0.99359 1.18431 0.92111 0.96270 0.93357 1.22406 0.96259 0.96313 1.02258 1.23250 0.94575 0.98492 0.88669 1.67743 1.28151 1.04464 1.20298 1.23053 0.90092 0.93757 0.98385 1.22390 0.99256 1.00497 0.94813 1.66229 1.04962 1.19808 1.27229 0.92479 0.97382 0.95507 0.78809 0.82310 0.78427 0.79904 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 15 2 C 0.01 0.37 5.46 84.65 0.46 0.84 15 3 Si 0.96 45.24 29.54 68.60 2.03 47.26 15 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 7 C -0.52 -30.49 8.97 25.60 0.23 -30.26 15 8 H 0.05 2.86 7.72 -2.91 -0.02 2.84 15 9 C 0.09 4.85 5.45 29.10 0.16 5.01 15 10 C 0.08 3.47 5.99 41.65 0.25 3.72 15 11 C -0.26 -9.22 11.02 66.82 0.74 -8.48 15 12 S 0.14 3.88 22.52 -56.49 -1.27 2.61 15 13 C 0.07 2.52 7.37 87.48 0.64 3.17 15 14 C 0.01 0.29 5.91 -19.89 -0.12 0.18 15 15 C -0.15 -3.16 9.69 22.62 0.22 -2.94 15 16 C 0.11 1.98 11.17 84.60 0.95 2.92 15 17 N -0.50 -11.38 10.35 -196.17 -2.03 -13.41 15 18 C 0.10 2.42 11.17 84.60 0.94 3.36 15 19 C -0.15 -4.20 9.77 22.62 0.22 -3.98 15 20 N -0.47 -20.62 10.01 -177.78 -1.78 -22.40 15 21 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 22 H 0.01 0.48 8.14 -2.39 -0.02 0.46 15 23 H 0.03 1.46 8.01 -2.39 -0.02 1.44 15 24 H 0.19 6.01 8.06 -2.91 -0.02 5.99 15 25 H 0.16 2.49 7.43 -2.91 -0.02 2.47 15 26 H 0.20 2.02 8.06 -2.91 -0.02 2.00 15 27 H 0.18 3.24 8.06 -2.91 -0.02 3.21 15 28 H 0.13 4.22 7.91 -2.91 -0.02 4.20 15 Total: -1.00 -69.45 270.68 3.10 -66.35 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.17 Total: 1.73 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 4.69 Total: -26.46 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -3.52 Total: -91.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.27 Total: 2.61 kcal Total: -69.45 3.10 -66.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259440133.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.436 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds