Wall clock time and date at job start Mon Mar 30 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.37888 * 119.94537 * 264.72169 * 10 9 7 12 12 C 1.39016 * 120.75821 * 179.75165 * 11 10 9 13 13 C 1.38761 * 120.03333 * 0.56500 * 12 11 10 14 14 C 1.39738 * 119.45503 * 359.68779 * 13 12 11 15 15 C 1.46802 * 134.24519 * 180.02562 * 14 13 12 16 16 C 1.33966 * 106.19477 * 179.97438 * 15 14 13 17 17 O 1.34493 * 110.14992 * 0.02562 * 16 15 14 18 18 C 1.34933 * 110.87187 * 359.97438 * 17 16 15 19 19 O 1.36510 * 108.72061 * 179.68669 * 13 12 11 20 20 C 1.43978 * 105.50628 * 342.70713 * 19 13 12 21 21 O 1.36640 * 131.30041 * 180.18918 * 12 11 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08007 * 119.62427 * 0.02562 * 11 10 9 26 26 H 1.08005 * 126.90292 * 359.95640 * 15 14 13 27 27 H 1.07997 * 124.92594 * 180.02562 * 16 15 14 28 28 H 1.09007 * 110.59263 * 268.58137 * 20 19 13 29 29 H 1.08993 * 110.72911 * 145.70888 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5939 -4.2393 -1.1892 12 6 3.4997 -5.2936 -1.2093 13 6 4.0404 -5.7675 -0.0225 14 6 3.6714 -5.1721 1.1867 15 6 4.0287 -5.4009 2.5921 16 6 3.3410 -4.4983 3.3041 17 8 2.5945 -3.7345 2.4867 18 6 2.7607 -4.1033 1.1994 19 8 4.8875 -6.7991 -0.3080 20 6 4.5475 -7.2182 -1.6428 21 8 4.0069 -6.0272 -2.2445 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.1736 -3.8788 -2.1166 26 1 4.7091 -6.1471 2.9750 27 1 3.3803 -4.3984 4.3788 28 1 3.7976 -8.0090 -1.6171 29 1 5.4352 -7.5507 -2.1807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259538832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:52 Heat of formation + Delta-G solvation = -34.033585 kcal Electronic energy + Delta-G solvation = -17217.063069 eV Core-core repulsion = 14265.948454 eV Total energy + Delta-G solvation = -2951.114616 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24320 -41.33021 -36.69489 -35.91210 -33.44999 -32.13482 -30.06019 -28.85339 -27.14561 -25.38705 -23.57360 -22.27951 -21.90490 -20.38736 -18.18882 -17.60576 -17.23750 -16.38461 -15.76092 -15.62791 -15.33685 -14.84241 -14.47573 -13.79654 -13.40680 -12.93323 -12.68429 -12.51675 -12.38139 -12.17746 -11.90213 -11.38515 -11.15310 -10.63935 -10.58239 -10.21411 -9.78285 -9.66411 -9.19162 -8.44786 -7.97375 -7.20149 -6.05981 -4.10236 1.27129 1.64481 2.70019 3.01413 3.29744 3.30713 3.37317 3.42891 3.68407 4.00878 4.44765 4.61505 4.80353 4.97587 5.13045 5.22541 5.29227 5.49092 5.56496 5.80790 5.83482 6.12215 6.34099 6.45987 6.63569 6.69066 6.88464 7.30316 7.45682 7.60662 7.67189 7.88590 8.24646 8.93490 9.53564 11.03557 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.007195 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.478591 B = 3890.868863 C = 4537.825679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.053 3.947 10 C -0.006 4.006 11 C -0.086 4.086 12 C 0.019 3.981 13 C 0.036 3.964 14 C -0.113 4.113 15 C -0.217 4.217 16 C 0.009 3.991 17 O -0.172 6.172 18 C 0.071 3.929 19 O -0.312 6.312 20 C 0.214 3.786 21 O -0.310 6.310 22 H 0.262 0.738 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.145 0.855 26 H 0.153 0.847 27 H 0.205 0.795 28 H 0.076 0.924 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.602 -12.508 1.771 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.016 3.984 10 C -0.006 4.006 11 C -0.105 4.105 12 C -0.025 4.025 13 C -0.008 4.008 14 C -0.114 4.114 15 C -0.236 4.236 16 C -0.057 4.057 17 O -0.072 6.072 18 C 0.024 3.976 19 O -0.229 6.229 20 C 0.102 3.898 21 O -0.227 6.227 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.163 0.837 26 H 0.170 0.830 27 H 0.222 0.778 28 H 0.094 0.906 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.455 -12.240 1.729 13.946 hybrid contribution 0.787 0.486 -0.034 0.926 sum 7.242 -11.754 1.695 13.910 Atomic orbital electron populations 1.69957 1.06008 1.26821 1.50339 1.24971 0.94885 0.99226 0.95008 0.86463 0.80176 0.83361 0.77645 1.19641 1.20877 1.20890 1.21040 0.93088 0.89590 1.51285 0.92359 1.18353 0.92141 0.88668 0.99204 1.19428 0.98284 0.96578 0.86342 1.19716 0.97172 0.94980 0.98638 1.19554 0.99921 0.98672 0.84349 1.18622 0.95499 0.93761 0.92903 1.18681 1.01782 0.99626 0.91318 1.22303 1.06390 1.04276 0.90650 1.23931 0.93579 0.91846 0.96346 1.84200 1.57014 1.51490 1.14519 1.19058 0.99020 0.95169 0.84371 1.87268 1.54569 1.48532 1.32509 1.25475 0.98578 0.87877 0.77849 1.87343 1.73747 1.31843 1.29784 0.92808 0.94446 0.94470 0.83719 0.82955 0.77827 0.90616 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 7 C -0.51 -14.29 9.09 -34.44 -0.31 -14.61 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 9 C 0.05 1.35 5.10 -29.03 -0.15 1.21 15 10 C -0.01 -0.12 5.08 -104.51 -0.53 -0.65 15 11 C -0.09 -1.73 9.65 -39.42 -0.38 -2.11 15 12 C 0.02 0.36 7.15 -39.10 -0.28 0.08 15 13 C 0.04 0.68 7.20 -38.83 -0.28 0.40 15 14 C -0.11 -2.16 6.40 -105.05 -0.67 -2.83 15 15 C -0.22 -3.38 11.14 -37.62 -0.42 -3.80 15 16 C 0.01 0.13 11.96 29.23 0.35 0.48 15 17 O -0.17 -3.44 10.59 3.43 0.04 -3.40 15 18 C 0.07 1.51 7.09 -38.52 -0.27 1.24 15 19 O -0.31 -5.14 11.40 -45.74 -0.52 -5.66 15 20 C 0.21 2.73 8.90 101.05 0.90 3.63 15 21 O -0.31 -5.17 11.41 -46.17 -0.53 -5.69 15 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 23 H 0.04 1.01 8.12 -51.93 -0.42 0.59 15 24 H 0.04 0.96 8.04 -51.93 -0.42 0.54 15 25 H 0.15 2.70 8.05 -52.48 -0.42 2.27 15 26 H 0.15 1.92 8.06 -52.48 -0.42 1.50 15 27 H 0.21 1.95 8.06 -52.49 -0.42 1.52 15 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 29 H 0.12 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -32.08 264.43 -5.95 -38.03 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -2.49 Total: -3.10 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.14 Total: -15.36 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.74 Total: -25.31 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -1.01 Total: -14.76 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.08 -5.95 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.998 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds