Wall clock time and date at job start Mon Mar 30 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.37888 * 119.94537 * 264.72169 * 10 9 7 12 12 C 1.39016 * 120.75821 * 179.75165 * 11 10 9 13 13 C 1.38761 * 120.03333 * 0.56500 * 12 11 10 14 14 C 1.39738 * 119.45503 * 359.68779 * 13 12 11 15 15 C 1.46802 * 134.24519 * 180.02562 * 14 13 12 16 16 C 1.33966 * 106.19477 * 179.97438 * 15 14 13 17 17 O 1.34493 * 110.14992 * 0.02562 * 16 15 14 18 18 C 1.34933 * 110.87187 * 359.97438 * 17 16 15 19 19 O 1.36510 * 108.72061 * 179.68669 * 13 12 11 20 20 C 1.43978 * 105.50628 * 342.70713 * 19 13 12 21 21 O 1.36640 * 131.30041 * 180.18918 * 12 11 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08007 * 119.62427 * 0.02562 * 11 10 9 26 26 H 1.08005 * 126.90292 * 359.95640 * 15 14 13 27 27 H 1.07997 * 124.92594 * 180.02562 * 16 15 14 28 28 H 1.09007 * 110.59263 * 268.58137 * 20 19 13 29 29 H 1.08993 * 110.72911 * 145.70888 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5939 -4.2393 -1.1892 12 6 3.4997 -5.2936 -1.2093 13 6 4.0404 -5.7675 -0.0225 14 6 3.6714 -5.1721 1.1867 15 6 4.0287 -5.4009 2.5921 16 6 3.3410 -4.4983 3.3041 17 8 2.5945 -3.7345 2.4867 18 6 2.7607 -4.1033 1.1994 19 8 4.8875 -6.7991 -0.3080 20 6 4.5475 -7.2182 -1.6428 21 8 4.0069 -6.0272 -2.2445 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.1736 -3.8788 -2.1166 26 1 4.7091 -6.1471 2.9750 27 1 3.3803 -4.3984 4.3788 28 1 3.7976 -8.0090 -1.6171 29 1 5.4352 -7.5507 -2.1807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259538832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:52 Heat of formation + Delta-G solvation = -54.699677 kcal Electronic energy + Delta-G solvation = -17217.959218 eV Core-core repulsion = 14265.948454 eV Total energy + Delta-G solvation = -2952.010765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.62323 -42.64913 -38.22877 -37.20880 -35.35217 -33.76715 -31.67290 -30.25126 -28.84449 -26.66034 -25.37507 -23.74531 -23.42307 -21.80821 -19.57348 -18.98612 -18.58658 -18.36753 -17.15043 -17.00567 -16.72970 -16.46937 -16.08326 -15.13924 -14.95642 -14.46270 -14.25507 -13.95643 -13.87300 -13.53939 -13.39750 -13.26866 -12.88483 -12.56076 -12.40433 -11.84645 -11.63418 -11.22392 -10.88385 -10.61071 -9.38842 -8.68461 -8.18445 -6.33482 -0.17566 0.14408 1.39830 1.40181 1.43855 1.54302 1.70037 1.99588 2.36999 2.49878 2.53406 3.10777 3.28649 3.68967 3.85509 3.94211 4.04883 4.18072 4.24691 4.45733 4.54195 4.81626 4.90158 4.91361 5.10676 5.17434 5.31598 5.48503 5.68131 5.71763 5.97131 6.10990 6.26297 6.76248 7.34466 8.89058 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.007195 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.478591 B = 3890.868863 C = 4537.825679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.065 3.935 10 C -0.035 4.035 11 C -0.091 4.091 12 C 0.015 3.985 13 C 0.041 3.959 14 C -0.124 4.124 15 C -0.219 4.219 16 C 0.019 3.981 17 O -0.202 6.202 18 C 0.046 3.954 19 O -0.316 6.316 20 C 0.204 3.796 21 O -0.319 6.319 22 H 0.267 0.733 23 H 0.009 0.991 24 H 0.020 0.980 25 H 0.148 0.852 26 H 0.187 0.813 27 H 0.258 0.742 28 H 0.104 0.896 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 -13.598 2.422 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.036 4.036 11 C -0.109 4.109 12 C -0.029 4.029 13 C -0.003 4.003 14 C -0.126 4.126 15 C -0.237 4.237 16 C -0.045 4.045 17 O -0.104 6.104 18 C -0.002 4.002 19 O -0.232 6.232 20 C 0.094 3.906 21 O -0.236 6.236 22 H 0.076 0.924 23 H 0.028 0.972 24 H 0.038 0.962 25 H 0.165 0.835 26 H 0.205 0.795 27 H 0.274 0.726 28 H 0.121 0.879 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.466 -13.359 2.373 15.992 hybrid contribution 0.217 0.661 -0.231 0.733 sum 8.683 -12.698 2.141 15.531 Atomic orbital electron populations 1.70066 1.07495 1.27988 1.50999 1.25840 0.95762 1.02838 0.94406 0.85411 0.78785 0.78840 0.78110 1.19307 1.19882 1.20021 1.21297 0.92865 0.91082 1.51404 0.93165 1.18018 0.92366 0.89865 0.96904 1.19107 0.99371 0.96941 0.88146 1.19658 0.97679 0.95522 0.98071 1.19469 0.99609 0.98486 0.85339 1.18753 0.95017 0.93880 0.92691 1.19033 1.01265 0.98919 0.93348 1.22702 1.07123 1.05309 0.88582 1.25006 0.91421 0.90116 0.97932 1.84182 1.58505 1.53081 1.14600 1.19114 1.00090 0.96336 0.84620 1.87255 1.53971 1.47642 1.34363 1.26173 1.01318 0.86758 0.76382 1.87327 1.73637 1.33020 1.29631 0.92415 0.97239 0.96158 0.83470 0.79536 0.72638 0.87856 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.20 15 2 C 0.01 0.58 5.46 84.66 0.46 1.05 15 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 7 C -0.53 -30.65 9.09 25.60 0.23 -30.42 15 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 15 9 C 0.07 3.55 5.10 29.10 0.15 3.70 15 10 C -0.03 -1.62 5.08 -19.79 -0.10 -1.72 15 11 C -0.09 -3.77 9.65 22.37 0.22 -3.55 15 12 C 0.02 0.57 7.15 22.58 0.16 0.73 15 13 C 0.04 1.50 7.20 22.76 0.16 1.66 15 14 C -0.12 -4.66 6.40 -20.14 -0.13 -4.79 15 15 C -0.22 -6.24 11.14 23.54 0.26 -5.97 15 16 C 0.02 0.53 11.96 66.85 0.80 1.33 15 17 O -0.20 -8.13 10.59 -10.63 -0.11 -8.25 15 18 C 0.05 1.99 7.09 22.96 0.16 2.15 15 19 O -0.32 -9.53 11.40 -76.15 -0.87 -10.40 15 20 C 0.20 4.53 8.90 113.37 1.01 5.54 15 21 O -0.32 -10.08 11.41 -77.69 -0.89 -10.96 15 22 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 23 H 0.01 0.55 8.12 -2.39 -0.02 0.53 15 24 H 0.02 1.13 8.04 -2.39 -0.02 1.11 15 25 H 0.15 5.79 8.05 -2.91 -0.02 5.76 15 26 H 0.19 3.92 8.06 -2.91 -0.02 3.90 15 27 H 0.26 3.81 8.06 -2.91 -0.02 3.79 15 28 H 0.10 1.77 8.14 -2.38 -0.02 1.75 15 29 H 0.17 2.24 8.14 -2.39 -0.02 2.22 15 Total: -1.00 -71.92 264.43 5.01 -66.91 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.18 Total: 1.54 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 3.39 Total: -30.31 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.87 Total: -29.61 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.92 5.01 -66.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.212 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds