Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35461 * 116.99916 * 2 1 4 4 C 1.39824 * 120.42060 * 270.01657 * 3 2 1 5 5 C 1.46772 * 134.24827 * 359.97438 * 4 3 2 6 6 C 1.34073 * 106.11043 * 179.97438 * 5 4 3 7 7 O 1.34421 * 110.10648 * 0.02562 * 6 5 4 8 8 C 1.34717 * 110.95702 * 359.97438 * 7 6 5 9 9 C 1.39611 * 133.11198 * 179.97438 * 8 7 6 10 10 C 1.36229 * 120.50222 * 179.72539 * 9 8 7 11 11 C 1.40238 * 120.74915 * 0.57242 * 10 9 8 12 12 C 1.47319 * 120.11102 * 179.73500 * 11 10 9 13 13 O 1.21875 * 120.00095 * 179.72096 * 12 11 10 14 14 C 1.41696 * 120.00021 * 359.71974 * 12 11 10 15 15 H 1.07992 * 119.99831 * 6.78705 * 14 12 11 16 16 C 1.40319 * 119.99888 * 186.51279 * 14 12 11 17 17 N 1.30541 * 119.99965 * 354.20183 * 16 14 12 18 18 Si 1.86798 * 119.99738 * 174.19915 * 16 14 12 19 19 H 1.48503 * 109.47065 * 94.98699 * 18 16 14 20 20 H 1.48498 * 109.47027 * 214.98900 * 18 16 14 21 21 H 1.48507 * 109.47264 * 334.98816 * 18 16 14 22 22 H 1.08999 * 109.47596 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47714 * 300.00600 * 1 2 3 24 24 H 1.09011 * 109.46864 * 60.00381 * 1 2 3 25 25 H 1.08000 * 126.93958 * 0.02562 * 5 4 3 26 26 H 1.08003 * 124.94717 * 180.02562 * 6 5 4 27 27 H 1.08006 * 119.75282 * 0.06124 * 9 8 7 28 28 H 1.07992 * 119.62781 * 180.27814 * 10 9 8 29 29 H 0.96998 * 119.99909 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 6 2.3651 1.8380 -1.2057 5 6 2.1890 1.4922 -2.6212 6 6 2.7073 2.5119 -3.3206 7 8 3.1851 3.4499 -2.4847 8 6 3.0016 3.0889 -1.1998 9 6 3.3131 3.6992 0.0166 10 6 2.9982 3.0927 1.1951 11 6 2.3669 1.8406 1.2109 12 6 2.0380 1.1949 2.4936 13 8 1.4848 0.1090 2.5050 14 6 2.3648 1.8363 3.7140 15 1 2.7539 2.8437 3.7072 16 6 2.1773 1.1648 4.9317 17 7 1.5977 -0.0048 4.9496 18 14 2.7574 1.9443 6.5271 19 1 1.6289 2.6720 7.1614 20 1 3.2432 0.8851 7.4476 21 1 3.8612 2.8956 6.2406 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7331 0.5975 -3.0190 26 1 2.7367 2.5710 -4.3986 27 1 3.8026 4.6619 0.0233 28 1 3.2416 3.5796 2.1278 29 1 1.4685 -0.4692 5.7913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259558795.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = -43.234825 kcal Electronic energy + Delta-G solvation = -17332.439049 eV Core-core repulsion = 14380.925437 eV Total energy + Delta-G solvation = -2951.513611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.04289 -38.72634 -36.45437 -35.64640 -32.65971 -32.24373 -29.72834 -28.78661 -26.80544 -26.06528 -23.15321 -22.01619 -20.77242 -19.86597 -17.55382 -17.37558 -15.90272 -15.81393 -15.59844 -15.25430 -14.58002 -14.51317 -14.24076 -13.26803 -12.93567 -12.61878 -12.34953 -12.19204 -11.98334 -11.54786 -11.35647 -11.20579 -10.89975 -10.61855 -10.38697 -10.13324 -9.76898 -9.24521 -8.97095 -7.95878 -7.53217 -7.42835 -6.30968 -4.90285 1.32127 1.68031 2.68254 3.03527 3.10713 3.12257 3.15785 3.82237 3.99309 4.37871 4.66287 4.80348 5.20799 5.40333 5.58366 5.67073 5.77548 5.79973 5.98693 6.02664 6.17308 6.24331 6.37005 6.48771 6.68209 6.87748 7.01949 7.12322 7.22636 7.48586 8.00536 8.29237 8.78091 8.81478 10.30690 10.52764 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.034138 B = 0.007126 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.000403 B = 3928.602156 C = 4674.495561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.313 6.313 3 C 0.164 3.836 4 C -0.167 4.167 5 C -0.193 4.193 6 C -0.017 4.017 7 O -0.199 6.199 8 C 0.056 3.944 9 C -0.134 4.134 10 C -0.050 4.050 11 C -0.141 4.141 12 C 0.389 3.611 13 O -0.520 6.520 14 C -0.519 4.519 15 H 0.074 0.926 16 C 0.081 3.919 17 N -0.734 5.734 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.260 1.260 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.153 0.847 26 H 0.203 0.797 27 H 0.127 0.873 28 H 0.147 0.853 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 5.526 -9.685 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.229 6.229 3 C 0.119 3.881 4 C -0.168 4.168 5 C -0.213 4.213 6 C -0.081 4.081 7 O -0.101 6.101 8 C 0.008 3.992 9 C -0.152 4.152 10 C -0.068 4.068 11 C -0.143 4.143 12 C 0.284 3.716 13 O -0.408 6.408 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.143 4.143 17 N -0.363 5.363 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.184 1.184 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.170 0.830 26 H 0.219 0.781 27 H 0.145 0.855 28 H 0.165 0.835 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.563 4.893 -9.700 10.879 hybrid contribution 0.165 0.468 0.597 0.777 sum 0.728 5.361 -9.103 10.589 Atomic orbital electron populations 1.22724 0.79028 1.02439 0.99532 1.85828 1.19536 1.23686 1.93848 1.18476 0.94980 0.85384 0.89225 1.20211 1.06659 0.96184 0.93786 1.22446 1.06575 1.01077 0.91167 1.23767 1.00340 0.88467 0.95541 1.83905 1.68115 1.43624 1.14460 1.19636 1.01332 0.94495 0.83705 1.19649 1.06383 1.01567 0.87635 1.21029 0.94786 0.93958 0.97042 1.22385 0.99606 0.94809 0.97470 1.17884 0.81709 0.86945 0.85097 1.90555 1.40543 1.21664 1.88086 1.20873 1.40568 1.01841 0.91702 0.90825 1.25962 0.93204 0.94342 1.00762 1.69963 1.27370 1.11346 1.27611 0.86376 0.79840 0.79751 0.81108 1.19539 1.20120 1.18425 0.89645 0.92794 0.95466 0.82959 0.78064 0.85527 0.83515 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 10.50 101.05 1.06 2.19 15 2 O -0.31 -7.40 8.86 -39.89 -0.35 -7.76 15 3 C 0.16 3.78 5.78 -38.16 -0.22 3.56 15 4 C -0.17 -3.33 6.34 -105.06 -0.67 -3.99 15 5 C -0.19 -3.07 11.15 -37.60 -0.42 -3.48 15 6 C -0.02 -0.22 11.96 29.27 0.35 0.13 15 7 O -0.20 -3.22 10.57 4.24 0.04 -3.18 15 8 C 0.06 1.03 7.42 -38.27 -0.28 0.74 15 9 C -0.13 -2.36 9.99 -39.79 -0.40 -2.76 15 10 C -0.05 -1.00 9.35 -39.55 -0.37 -1.37 15 11 C -0.14 -3.39 5.90 -104.63 -0.62 -4.01 15 12 C 0.39 10.96 6.89 -34.57 -0.24 10.72 15 13 O -0.52 -16.20 12.62 -16.78 -0.21 -16.42 15 14 C -0.52 -13.98 8.83 -37.48 -0.33 -14.31 15 15 H 0.07 1.77 6.04 -52.49 -0.32 1.46 15 16 C 0.08 2.13 5.49 -17.32 -0.10 2.04 15 17 N -0.73 -20.83 11.75 55.56 0.65 -20.18 15 18 Si 0.91 18.96 29.57 -169.99 -5.03 13.93 15 19 H -0.27 -5.53 7.11 56.52 0.40 -5.12 15 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 22 H 0.09 1.50 8.14 -51.93 -0.42 1.07 15 23 H 0.05 1.18 7.51 -51.93 -0.39 0.79 15 24 H 0.03 0.46 8.14 -51.92 -0.42 0.03 15 25 H 0.15 2.09 8.06 -52.49 -0.42 1.66 15 26 H 0.20 1.63 8.06 -52.48 -0.42 1.20 15 27 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 28 H 0.15 2.70 6.18 -52.49 -0.32 2.38 15 29 H 0.27 6.97 8.29 -40.82 -0.34 6.64 15 LS Contribution 262.76 15.07 3.96 3.96 Total: -1.00 -33.42 262.76 -5.44 -38.86 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.28 Total: 1.32 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.23 Total: -10.54 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.65 Total: -20.18 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.52 Total: -27.35 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.42 -5.44 -38.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558795.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.374 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds