Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35461 * 116.99916 * 2 1 4 4 C 1.39824 * 120.42060 * 270.01657 * 3 2 1 5 5 C 1.46772 * 134.24827 * 359.97438 * 4 3 2 6 6 C 1.34073 * 106.11043 * 179.97438 * 5 4 3 7 7 O 1.34421 * 110.10648 * 0.02562 * 6 5 4 8 8 C 1.34717 * 110.95702 * 359.97438 * 7 6 5 9 9 C 1.39611 * 133.11198 * 179.97438 * 8 7 6 10 10 C 1.36229 * 120.50222 * 179.72539 * 9 8 7 11 11 C 1.40238 * 120.74915 * 0.57242 * 10 9 8 12 12 C 1.47319 * 120.11102 * 179.73500 * 11 10 9 13 13 O 1.21875 * 120.00095 * 179.72096 * 12 11 10 14 14 C 1.41696 * 120.00021 * 359.71974 * 12 11 10 15 15 H 1.07992 * 119.99831 * 6.78705 * 14 12 11 16 16 C 1.40319 * 119.99888 * 186.51279 * 14 12 11 17 17 N 1.30541 * 119.99965 * 354.20183 * 16 14 12 18 18 Si 1.86798 * 119.99738 * 174.19915 * 16 14 12 19 19 H 1.48503 * 109.47065 * 94.98699 * 18 16 14 20 20 H 1.48498 * 109.47027 * 214.98900 * 18 16 14 21 21 H 1.48507 * 109.47264 * 334.98816 * 18 16 14 22 22 H 1.08999 * 109.47596 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47714 * 300.00600 * 1 2 3 24 24 H 1.09011 * 109.46864 * 60.00381 * 1 2 3 25 25 H 1.08000 * 126.93958 * 0.02562 * 5 4 3 26 26 H 1.08003 * 124.94717 * 180.02562 * 6 5 4 27 27 H 1.08006 * 119.75282 * 0.06124 * 9 8 7 28 28 H 1.07992 * 119.62781 * 180.27814 * 10 9 8 29 29 H 0.96998 * 119.99909 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 6 2.3651 1.8380 -1.2057 5 6 2.1890 1.4922 -2.6212 6 6 2.7073 2.5119 -3.3206 7 8 3.1851 3.4499 -2.4847 8 6 3.0016 3.0889 -1.1998 9 6 3.3131 3.6992 0.0166 10 6 2.9982 3.0927 1.1951 11 6 2.3669 1.8406 1.2109 12 6 2.0380 1.1949 2.4936 13 8 1.4848 0.1090 2.5050 14 6 2.3648 1.8363 3.7140 15 1 2.7539 2.8437 3.7072 16 6 2.1773 1.1648 4.9317 17 7 1.5977 -0.0048 4.9496 18 14 2.7574 1.9443 6.5271 19 1 1.6289 2.6720 7.1614 20 1 3.2432 0.8851 7.4476 21 1 3.8612 2.8956 6.2406 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7331 0.5975 -3.0190 26 1 2.7367 2.5710 -4.3986 27 1 3.8026 4.6619 0.0233 28 1 3.2416 3.5796 2.1278 29 1 1.4685 -0.4692 5.7913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259558795.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = -65.000377 kcal Electronic energy + Delta-G solvation = -17333.382874 eV Core-core repulsion = 14380.925437 eV Total energy + Delta-G solvation = -2952.457437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.37237 -40.39499 -38.32919 -37.35072 -34.71774 -33.57107 -31.38166 -30.25241 -28.69270 -27.71496 -24.81362 -23.43697 -22.13110 -21.70201 -19.04036 -18.97068 -17.74028 -17.35171 -17.16432 -16.76464 -16.21305 -16.06620 -15.86309 -15.03317 -14.31251 -14.24743 -14.08869 -13.82789 -13.57665 -13.18367 -13.04723 -12.83910 -12.58436 -12.33358 -12.04989 -11.90283 -11.09369 -10.98140 -10.89751 -9.50692 -9.47543 -9.01930 -8.30957 -7.02445 -0.14505 0.12235 1.38928 1.40096 1.44309 1.57148 1.84667 2.15712 2.22518 2.59027 2.99086 3.57720 3.72700 3.86199 4.06879 4.15266 4.29231 4.42379 4.49872 4.51180 4.69141 4.74594 4.82566 5.09195 5.18294 5.31748 5.42540 5.49857 5.58941 5.98917 6.12657 6.64398 6.73005 6.82243 8.29618 8.52247 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.034138 B = 0.007126 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.000403 B = 3928.602156 C = 4674.495561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 O -0.341 6.341 3 C 0.139 3.861 4 C -0.184 4.184 5 C -0.224 4.224 6 C 0.023 3.977 7 O -0.194 6.194 8 C 0.050 3.950 9 C -0.113 4.113 10 C -0.058 4.058 11 C -0.182 4.182 12 C 0.365 3.635 13 O -0.570 6.570 14 C -0.544 4.544 15 H 0.097 0.903 16 C 0.024 3.976 17 N -0.788 5.788 18 Si 0.994 3.006 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.243 1.243 22 H 0.101 0.899 23 H 0.019 0.981 24 H 0.058 0.942 25 H 0.169 0.831 26 H 0.264 0.736 27 H 0.170 0.830 28 H 0.158 0.842 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 8.076 -11.338 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 O -0.258 6.258 3 C 0.094 3.906 4 C -0.185 4.185 5 C -0.243 4.243 6 C -0.040 4.040 7 O -0.095 6.095 8 C 0.002 3.998 9 C -0.131 4.131 10 C -0.076 4.076 11 C -0.184 4.184 12 C 0.263 3.737 13 O -0.463 6.463 14 C -0.575 4.575 15 H 0.115 0.885 16 C -0.195 4.195 17 N -0.417 5.417 18 Si 0.813 3.187 19 H -0.184 1.184 20 H -0.196 1.196 21 H -0.166 1.166 22 H 0.120 0.880 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.186 0.814 26 H 0.279 0.721 27 H 0.188 0.812 28 H 0.175 0.825 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.879 7.470 -11.378 13.740 hybrid contribution -0.253 -0.306 0.882 0.967 sum 1.626 7.165 -10.495 12.811 Atomic orbital electron populations 1.22776 0.77841 1.03465 0.99226 1.85754 1.21034 1.24956 1.94052 1.18716 0.95958 0.85563 0.90352 1.20518 1.06542 0.96792 0.94690 1.22724 1.09072 1.03248 0.89256 1.24874 0.95963 0.85912 0.97286 1.83961 1.67821 1.44208 1.13526 1.19840 1.00860 0.94033 0.85028 1.19966 1.04356 1.02443 0.86370 1.21061 0.95127 0.92674 0.98753 1.22155 1.02908 0.97069 0.96238 1.18577 0.80909 0.86692 0.87495 1.90492 1.42761 1.23680 1.89330 1.21397 1.40831 1.03061 0.92173 0.88480 1.27235 0.92492 0.94564 1.05163 1.70118 1.28881 1.13472 1.29217 0.85048 0.79806 0.78823 0.75027 1.18385 1.19650 1.16596 0.88023 0.96227 0.92385 0.81370 0.72065 0.81236 0.82462 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.53 10.50 113.37 1.19 3.72 15 2 O -0.34 -17.04 8.86 -66.74 -0.59 -17.64 15 3 C 0.14 6.63 5.78 23.19 0.13 6.76 15 4 C -0.18 -7.18 6.34 -20.15 -0.13 -7.31 15 5 C -0.22 -6.49 11.15 23.55 0.26 -6.23 15 6 C 0.02 0.50 11.96 66.87 0.80 1.30 15 7 O -0.19 -5.41 10.57 -7.73 -0.08 -5.49 15 8 C 0.05 1.73 7.42 23.12 0.17 1.90 15 9 C -0.11 -3.73 9.99 22.13 0.22 -3.50 15 10 C -0.06 -2.32 9.35 22.29 0.21 -2.11 15 11 C -0.18 -9.15 5.90 -19.87 -0.12 -9.27 15 12 C 0.37 21.82 6.89 25.52 0.18 22.00 15 13 O -0.57 -38.21 12.62 15.95 0.20 -38.01 15 14 C -0.54 -30.35 8.83 23.63 0.21 -30.14 15 15 H 0.10 4.73 6.04 -2.91 -0.02 4.71 15 16 C 0.02 1.31 5.49 85.39 0.47 1.78 15 17 N -0.79 -46.86 11.75 21.88 0.26 -46.61 15 18 Si 0.99 39.13 29.57 68.60 2.03 41.16 15 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 21 H -0.24 -8.80 7.11 99.48 0.71 -8.09 15 22 H 0.10 3.75 8.14 -2.39 -0.02 3.73 15 23 H 0.02 0.92 7.51 -2.39 -0.02 0.90 15 24 H 0.06 1.99 8.14 -2.38 -0.02 1.97 15 25 H 0.17 4.21 8.06 -2.91 -0.02 4.18 15 26 H 0.26 2.28 8.06 -2.91 -0.02 2.25 15 27 H 0.17 4.05 8.06 -2.91 -0.02 4.02 15 28 H 0.16 5.72 6.18 -2.91 -0.02 5.70 15 29 H 0.28 14.94 8.29 -92.71 -0.77 14.17 15 Total: -1.00 -79.38 262.76 6.60 -72.78 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.19 Total: 14.90 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 3.60 Total: -21.09 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.26 Total: -46.61 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -0.47 Total: -61.13 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -79.38 6.60 -72.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558795.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.778 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds