Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.47206 * 109.47021 * 2 1 4 4 N 2.60801 * 109.47054 * 0.02562 * 2 1 3 5 5 C 1.50700 * 109.47263 * 240.00465 * 2 1 3 6 6 H 1.08004 * 119.99826 * 244.85570 * 5 2 1 7 7 C 1.37878 * 120.00198 * 64.84969 * 5 2 1 8 8 N 1.31516 * 119.99829 * 0.02562 * 7 5 2 9 9 Si 1.86797 * 120.00032 * 180.02562 * 7 5 2 10 10 H 1.48498 * 109.47496 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47238 * 120.00242 * 9 7 5 12 12 H 1.48506 * 109.46931 * 240.00177 * 9 7 5 13 13 C 1.50702 * 109.47548 * 120.00071 * 2 1 3 14 14 C 1.38232 * 120.00214 * 234.42405 * 13 2 1 15 15 C 1.38232 * 119.99927 * 179.78840 * 14 13 2 16 16 C 1.38233 * 119.99910 * 0.46108 * 15 14 13 17 17 N 1.48021 * 120.00255 * 179.79255 * 16 15 14 18 18 O 1.21795 * 120.00440 * 179.97438 * 17 16 15 19 19 O 1.21805 * 119.99694 * 359.97438 * 17 16 15 20 20 C 1.38235 * 120.00248 * 359.76893 * 16 15 14 21 21 C 1.38233 * 119.99646 * 54.69544 * 13 2 1 22 22 H 1.09002 * 109.47392 * 299.99811 * 1 2 3 23 23 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47577 * 60.00055 * 1 2 3 25 25 H 0.96996 * 119.99706 * 180.02562 * 8 7 5 26 26 H 1.08001 * 120.00139 * 359.97438 * 14 13 2 27 27 H 1.07997 * 119.99832 * 180.25282 * 15 14 13 28 28 H 1.08002 * 120.00176 * 180.02562 * 20 16 15 29 29 H 1.08004 * 120.00034 * 359.97438 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3992 2.4589 0.0011 5 6 2.0323 -0.7103 -1.2305 6 1 2.5870 -1.6319 -1.1334 7 6 1.7837 -0.1837 -2.4803 8 7 1.1085 0.9387 -2.5985 9 14 2.4058 -1.0646 -4.0056 10 1 3.1308 -2.2969 -3.6045 11 1 1.2553 -1.4275 -4.8715 12 1 3.3254 -0.1699 -4.7534 13 6 2.0324 -0.7104 1.2304 14 6 2.9194 -0.0769 2.0805 15 6 3.3769 -0.7270 3.2115 16 6 2.9546 -2.0141 3.4872 17 7 3.4480 -2.7119 4.6958 18 8 3.0757 -3.8457 4.9390 19 8 4.2264 -2.1522 5.4471 20 6 2.0713 -2.6493 2.6346 21 6 1.6105 -1.9976 1.5059 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 0.9333 1.3089 -3.4778 26 1 3.2528 0.9270 1.8627 27 1 4.0667 -0.2305 3.8778 28 1 1.7411 -3.6548 2.8503 29 1 0.9205 -2.4940 0.8396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572799.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = 38.335268 kcal Electronic energy + Delta-G solvation = -16936.828099 eV Core-core repulsion = 14021.144384 eV Total energy + Delta-G solvation = -2915.683716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.95288 -39.57919 -36.36699 -36.36030 -33.92261 -32.30542 -31.14496 -29.82999 -26.12154 -25.64929 -23.50284 -22.53368 -21.13179 -19.09533 -18.51188 -17.76106 -17.32303 -16.45194 -15.23110 -14.82623 -14.61730 -14.06075 -13.59113 -13.47941 -12.79515 -12.50797 -12.03754 -11.74232 -11.51830 -11.41854 -11.31170 -11.18691 -11.11723 -10.98464 -10.97660 -10.66991 -10.54304 -10.15311 -9.72938 -9.13040 -8.93476 -8.82279 -6.51268 -4.67515 0.11772 1.24414 1.65257 1.66530 3.05728 3.16160 3.18260 3.60229 3.98899 4.00702 4.16301 4.60205 4.72154 4.78170 5.07754 5.14705 5.33468 5.48867 5.57150 5.89330 6.03114 6.16202 6.32698 6.41588 6.46047 6.57080 6.73225 6.84547 7.26154 7.46902 7.58964 7.85970 8.33739 8.89686 9.04443 10.53205 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.006324 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.089562 B = 4426.388749 C = 4810.428419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.185 3.815 3 C 0.267 3.733 4 N -0.501 5.501 5 C -0.526 4.526 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.868 5.868 9 Si 0.908 3.092 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.024 3.976 14 C -0.128 4.128 15 C -0.051 4.051 16 C -0.068 4.068 17 N 0.037 4.963 18 O -0.174 6.174 19 O -0.178 6.178 20 C -0.055 4.055 21 C -0.103 4.103 22 H 0.026 0.974 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.272 0.728 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -5.984 6.019 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.181 3.819 3 C -0.050 4.050 4 N -0.178 5.178 5 C -0.564 4.564 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.502 5.502 9 Si 0.734 3.266 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.023 3.977 14 C -0.147 4.147 15 C -0.071 4.071 16 C -0.151 4.151 17 N 0.553 4.447 18 O -0.388 6.388 19 O -0.391 6.391 20 C -0.074 4.074 21 C -0.122 4.122 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.158 0.842 27 H 0.164 0.836 28 H 0.166 0.834 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.661 -3.880 5.315 6.614 hybrid contribution 0.385 -0.840 -0.688 1.152 sum -0.276 -4.720 4.627 6.616 Atomic orbital electron populations 1.21852 0.93455 1.01532 1.01915 1.15123 0.94161 0.81483 0.91135 1.29508 0.91435 0.94482 0.89546 1.80896 1.11556 1.13102 1.12214 1.20852 1.38460 1.09472 0.87616 0.90298 1.25058 0.93901 0.94683 0.99721 1.69849 1.37005 1.18282 1.25093 0.86256 0.78873 0.79723 0.81748 1.19147 1.20365 1.20690 1.20639 0.90283 0.93549 0.93270 1.21288 0.98499 1.01311 0.93583 1.20938 0.97515 0.91420 0.97180 1.21013 1.07792 0.95821 0.90473 1.43693 0.98618 1.00557 1.01819 1.94492 1.61439 1.03700 1.79210 1.94503 1.30437 1.68502 1.45636 1.21017 0.93255 1.00642 0.92519 1.21079 1.00962 0.94213 0.95939 0.95493 0.92387 0.89063 0.91811 0.84212 0.83618 0.83358 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.00 37.15 0.30 -2.10 15 2 C 0.18 3.71 0.53 -159.60 -0.09 3.63 15 3 C 0.27 6.04 10.19 -20.76 -0.21 5.83 15 4 N -0.50 -12.10 18.47 42.15 0.78 -11.32 15 5 C -0.53 -11.62 7.76 -34.44 -0.27 -11.89 15 6 H 0.08 1.69 7.68 -52.48 -0.40 1.29 15 7 C 0.07 1.70 5.15 -17.82 -0.09 1.61 15 8 N -0.87 -21.46 10.51 55.43 0.58 -20.87 15 9 Si 0.91 18.55 29.54 -169.99 -5.02 13.53 15 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 13 C 0.02 0.41 4.70 -104.62 -0.49 -0.08 15 14 C -0.13 -2.07 9.15 -39.59 -0.36 -2.44 15 15 C -0.05 -0.76 9.56 -39.59 -0.38 -1.14 15 16 C -0.07 -1.02 6.85 -79.95 -0.55 -1.57 15 17 N 0.04 0.61 4.45 33.96 0.15 0.76 15 18 O -0.17 -2.84 18.45 -29.46 -0.54 -3.39 15 19 O -0.18 -2.96 18.45 -29.46 -0.54 -3.50 15 20 C -0.06 -0.75 9.56 -39.58 -0.38 -1.13 15 21 C -0.10 -1.48 8.87 -39.58 -0.35 -1.83 15 22 H 0.03 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.06 0.93 7.11 -51.93 -0.37 0.56 15 24 H 0.09 1.94 6.47 -51.93 -0.34 1.60 15 25 H 0.27 6.52 8.31 -40.82 -0.34 6.18 15 26 H 0.14 2.37 6.45 -52.49 -0.34 2.03 15 27 H 0.15 1.91 7.61 -52.49 -0.40 1.51 15 28 H 0.15 1.70 7.61 -52.49 -0.40 1.30 15 29 H 0.15 1.96 7.27 -52.48 -0.38 1.57 15 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -25.92 268.15 -5.61 -31.53 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.18 Total: 0.33 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.87 Total: -11.10 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 1.51 Total: -31.43 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -1.09 Total: -6.89 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.92 -5.61 -31.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572799.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.866 kcal (2) G-P(sol) polarization free energy of solvation -25.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds