Wall clock time and date at job start Mon Mar 30 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47202 * 109.47137 * 2 1 4 4 N 2.60804 * 109.47164 * 359.97438 * 2 1 3 5 5 C 1.50695 * 109.47395 * 119.99897 * 2 1 3 6 6 H 1.07997 * 120.00283 * 115.30893 * 5 2 1 7 7 C 1.37876 * 119.99964 * 295.31397 * 5 2 1 8 8 N 1.31511 * 120.00023 * 0.02562 * 7 5 2 9 9 Si 1.86803 * 119.99969 * 179.97438 * 7 5 2 10 10 H 1.48502 * 109.47126 * 60.00320 * 9 7 5 11 11 H 1.48500 * 109.47113 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47351 * 299.99783 * 9 7 5 13 13 C 1.50701 * 109.47347 * 240.00270 * 2 1 3 14 14 C 1.38237 * 119.99596 * 294.64780 * 13 2 1 15 15 C 1.38240 * 120.00042 * 179.97438 * 14 13 2 16 16 C 1.38238 * 119.99458 * 0.27415 * 15 14 13 17 17 N 1.48018 * 119.99456 * 179.72980 * 16 15 14 18 18 O 1.21797 * 120.00532 * 359.97438 * 17 16 15 19 19 O 1.21806 * 119.99831 * 179.97438 * 17 16 15 20 20 C 1.38236 * 120.00199 * 359.52933 * 16 15 14 21 21 C 1.38228 * 120.00246 * 114.66787 * 13 2 1 22 22 H 1.08999 * 109.46677 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47072 * 299.99922 * 1 2 3 24 24 H 1.08996 * 109.46922 * 59.99906 * 1 2 3 25 25 H 0.97001 * 120.00016 * 180.02562 * 8 7 5 26 26 H 1.08001 * 120.00157 * 359.97438 * 14 13 2 27 27 H 1.07991 * 120.00241 * 180.02562 * 15 14 13 28 28 H 1.07999 * 119.99762 * 180.21347 * 20 16 15 29 29 H 1.08000 * 120.00442 * 0.02562 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 6 2.0324 -0.7103 1.2304 6 1 2.5894 -1.6305 1.1332 7 6 1.7809 -0.1856 2.4804 8 7 1.1021 0.9345 2.5989 9 14 2.4030 -1.0665 4.0056 10 1 3.8836 -1.1669 3.9500 11 1 2.0032 -0.3038 5.2154 12 1 1.8163 -2.4294 4.0641 13 6 2.0324 -0.7103 -1.2305 14 6 1.7921 -2.0617 -1.3949 15 6 2.2524 -2.7133 -2.5239 16 6 2.9580 -2.0146 -3.4856 17 7 3.4561 -2.7136 -4.6916 18 8 3.2447 -3.9043 -4.8363 19 8 4.0774 -2.0979 -5.5393 20 6 3.1948 -0.6624 -3.3231 21 6 2.7338 -0.0108 -2.1945 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.9255 1.3039 3.4782 26 1 1.2446 -2.6084 -0.6414 27 1 2.0643 -3.7689 -2.6525 28 1 3.7430 -0.1159 -4.0762 29 1 2.9223 1.0448 -2.0657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:16 Heat of formation + Delta-G solvation = 38.179737 kcal Electronic energy + Delta-G solvation = -16937.782431 eV Core-core repulsion = 14022.091971 eV Total energy + Delta-G solvation = -2915.690460 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.95278 -39.57495 -36.36601 -36.35793 -33.92014 -32.29618 -31.13230 -29.84156 -26.11977 -25.64015 -23.46860 -22.56699 -21.15034 -19.09269 -18.52651 -17.71736 -17.32379 -16.44689 -15.22166 -14.81438 -14.57666 -14.07783 -13.57567 -13.45984 -12.80975 -12.54572 -12.05453 -11.71142 -11.51933 -11.40745 -11.28087 -11.20391 -11.08665 -10.98707 -10.97683 -10.68762 -10.58907 -10.15452 -9.70933 -9.12529 -8.93253 -8.82347 -6.50634 -4.67064 0.11639 1.24561 1.65289 1.66391 3.08119 3.15683 3.16222 3.60208 3.99083 4.01145 4.16010 4.61385 4.72426 4.78333 5.07935 5.14717 5.33933 5.49264 5.57887 5.89778 6.04168 6.16524 6.33160 6.44190 6.47045 6.56474 6.73317 6.84086 7.26355 7.47010 7.59867 7.85897 8.33188 8.89873 9.04807 10.53849 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.006373 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.655582 B = 4392.322625 C = 4843.888559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.186 3.814 3 C 0.267 3.733 4 N -0.501 5.501 5 C -0.529 4.529 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.869 5.869 9 Si 0.908 3.092 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.023 3.977 14 C -0.100 4.100 15 C -0.056 4.056 16 C -0.067 4.067 17 N 0.037 4.963 18 O -0.174 6.174 19 O -0.178 6.178 20 C -0.052 4.052 21 C -0.130 4.130 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.026 0.974 25 H 0.273 0.727 26 H 0.156 0.844 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 -6.020 -5.979 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.182 3.818 3 C -0.050 4.050 4 N -0.178 5.178 5 C -0.567 4.567 6 H 0.097 0.903 7 C -0.133 4.133 8 N -0.502 5.502 9 Si 0.734 3.266 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.021 3.979 14 C -0.119 4.119 15 C -0.075 4.075 16 C -0.150 4.150 17 N 0.553 4.447 18 O -0.388 6.388 19 O -0.391 6.391 20 C -0.071 4.071 21 C -0.149 4.149 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.174 0.826 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.663 -3.909 -5.272 6.596 hybrid contribution 0.394 -0.839 0.669 1.143 sum -0.268 -4.748 -4.603 6.619 Atomic orbital electron populations 1.21837 0.93327 1.01559 1.01900 1.15106 0.94127 0.81472 0.91124 1.29527 0.91445 0.94488 0.89513 1.80899 1.11560 1.13131 1.12224 1.20809 1.38466 1.09635 0.87751 0.90325 1.25055 0.93876 0.94679 0.99721 1.69828 1.36746 1.18377 1.25294 0.86369 0.79561 0.79667 0.81007 1.19838 1.20933 1.19446 1.20644 0.89638 0.93931 0.93650 1.21110 1.00337 0.93965 0.96480 1.21035 0.93687 1.01149 0.91651 1.21021 1.10650 0.93908 0.89471 1.43696 0.98168 1.00858 1.01976 1.94493 1.61972 0.98551 1.83811 1.94502 1.39396 1.67766 1.37423 1.20933 0.96688 0.91276 0.98198 1.21299 0.99408 1.01220 0.92924 0.92419 0.89008 0.95530 0.91704 0.82601 0.83359 0.83629 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.11 37.16 0.30 -2.08 15 2 C 0.19 3.73 0.53 -159.60 -0.09 3.64 15 3 C 0.27 6.04 10.20 -20.76 -0.21 5.83 15 4 N -0.50 -12.11 18.47 42.15 0.78 -11.33 15 5 C -0.53 -11.62 7.56 -34.44 -0.26 -11.88 15 6 H 0.08 1.65 7.37 -52.49 -0.39 1.26 15 7 C 0.07 1.71 5.14 -17.82 -0.09 1.62 15 8 N -0.87 -21.46 10.51 55.43 0.58 -20.88 15 9 Si 0.91 18.49 29.54 -169.99 -5.02 13.47 15 10 H -0.27 -5.68 7.11 56.52 0.40 -5.27 15 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 12 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 13 C 0.02 0.39 4.72 -104.63 -0.49 -0.11 15 14 C -0.10 -1.45 8.55 -39.58 -0.34 -1.79 15 15 C -0.06 -0.77 9.56 -39.58 -0.38 -1.14 15 16 C -0.07 -1.01 6.85 -79.95 -0.55 -1.56 15 17 N 0.04 0.60 4.45 33.96 0.15 0.76 15 18 O -0.17 -2.84 18.45 -29.46 -0.54 -3.38 15 19 O -0.18 -2.96 18.45 -29.46 -0.54 -3.50 15 20 C -0.05 -0.76 9.56 -39.58 -0.38 -1.14 15 21 C -0.13 -2.09 9.15 -39.59 -0.36 -2.45 15 22 H 0.06 0.94 7.72 -51.93 -0.40 0.54 15 23 H 0.09 1.95 6.45 -51.93 -0.33 1.62 15 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 15 25 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 26 H 0.16 2.03 7.76 -52.49 -0.41 1.62 15 27 H 0.15 1.71 7.61 -52.49 -0.40 1.31 15 28 H 0.15 1.89 7.61 -52.49 -0.40 1.49 15 29 H 0.14 2.33 6.45 -52.49 -0.34 1.99 15 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -25.81 268.55 -5.62 -31.43 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.22 Total: 0.44 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.85 Total: -11.05 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 1.51 Total: -31.45 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -1.09 Total: -6.89 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.81 -5.62 -31.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -25.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds