Wall clock time and date at job start Mon Mar 30 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47203 * 109.47271 * 2 1 4 4 N 2.60807 * 109.47199 * 0.02562 * 2 1 3 5 5 C 1.50699 * 109.47176 * 240.00676 * 2 1 3 6 6 H 1.08007 * 119.99570 * 244.74944 * 5 2 1 7 7 C 1.37877 * 120.00130 * 64.74907 * 5 2 1 8 8 N 1.31506 * 120.00103 * 0.02562 * 7 5 2 9 9 Si 1.86803 * 119.99706 * 180.02562 * 7 5 2 10 10 H 1.48501 * 109.47369 * 59.99682 * 9 7 5 11 11 H 1.48508 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47063 * 299.99902 * 9 7 5 13 13 C 1.50697 * 109.47520 * 120.00232 * 2 1 3 14 14 C 1.38258 * 119.99409 * 2.69099 * 13 2 1 15 15 C 1.38217 * 119.99852 * 179.97438 * 14 13 2 16 16 C 1.38257 * 119.99719 * 359.97438 * 15 14 13 17 17 C 1.38210 * 120.00281 * 359.80949 * 16 15 14 18 18 C 1.38214 * 120.00374 * 182.71593 * 13 2 1 19 19 N 1.48017 * 119.99832 * 359.97438 * 18 13 2 20 20 O 1.21798 * 119.99780 * 173.63521 * 19 18 13 21 21 O 1.21802 * 120.00033 * 353.35886 * 19 18 13 22 22 H 1.08996 * 109.47105 * 295.04009 * 1 2 3 23 23 H 1.09003 * 109.46901 * 55.03823 * 1 2 3 24 24 H 1.08993 * 109.47310 * 175.03834 * 1 2 3 25 25 H 0.97009 * 119.99908 * 180.02562 * 8 7 5 26 26 H 1.07999 * 120.00402 * 359.97438 * 14 13 2 27 27 H 1.07995 * 120.00238 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.99448 * 179.97438 * 16 15 14 29 29 H 1.08005 * 120.00170 * 180.22565 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4589 0.0011 5 6 2.0323 -0.7103 -1.2305 6 1 2.5885 -1.6310 -1.1333 7 6 1.7819 -0.1847 -2.4804 8 7 1.1051 0.9366 -2.5987 9 14 2.4040 -1.0656 -4.0057 10 1 1.8162 -2.4280 -4.0649 11 1 2.0066 -0.3014 -5.2154 12 1 3.8845 -1.1674 -3.9493 13 6 2.0324 -0.7104 1.2304 14 6 1.1352 -1.2843 2.1119 15 6 1.5959 -1.9364 3.2402 16 6 2.9540 -2.0152 3.4868 17 6 3.8511 -1.4453 2.6033 18 6 3.3900 -0.7878 1.4778 19 7 4.3505 -0.1734 0.5340 20 8 5.5367 -0.1393 0.8083 21 8 3.9553 0.2937 -0.5192 22 1 -0.3633 0.4349 0.9310 23 1 -0.3633 0.5889 -0.8422 24 1 -0.3633 -1.0237 -0.0889 25 1 0.9286 1.3061 -3.4781 26 1 0.0743 -1.2232 1.9190 27 1 0.8951 -2.3844 3.9290 28 1 3.3139 -2.5243 4.3687 29 1 4.9122 -1.5100 2.7941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259577945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:19 Heat of formation + Delta-G solvation = 64.176276 kcal Electronic energy + Delta-G solvation = -18097.231823 eV Core-core repulsion = 15182.668657 eV Total energy + Delta-G solvation = -2914.563165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27005 -39.14807 -36.49717 -35.08453 -33.61094 -32.04523 -31.48902 -29.01100 -25.85975 -25.59076 -23.66317 -21.57626 -21.05932 -18.51366 -17.76698 -17.52677 -16.36048 -16.33584 -15.12379 -14.85212 -14.54690 -14.06488 -13.57904 -13.08008 -12.57524 -12.17316 -11.93466 -11.64939 -11.38602 -11.25702 -10.95721 -10.92196 -10.56539 -10.50950 -10.34697 -10.08755 -9.80952 -9.71922 -9.49943 -9.14928 -8.71190 -8.61027 -6.30715 -4.28579 0.56842 1.34043 2.12022 2.40286 3.25118 3.31200 3.35801 3.71347 4.23562 4.26380 4.48442 4.83113 4.87808 4.97147 5.13405 5.29607 5.36036 5.60842 5.82977 5.95964 6.12785 6.24304 6.34641 6.42928 6.63488 6.72667 6.90140 7.37566 7.43117 7.62206 7.73897 8.47522 8.76962 9.21191 9.24305 10.74405 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.010805 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.716657 B = 2590.786286 C = 2873.134844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.185 3.815 3 C 0.278 3.722 4 N -0.499 5.499 5 C -0.473 4.473 6 H 0.067 0.933 7 C 0.078 3.922 8 N -0.860 5.860 9 Si 0.904 3.096 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.013 3.987 14 C -0.120 4.120 15 C -0.081 4.081 16 C -0.137 4.137 17 C -0.067 4.067 18 C -0.028 4.028 19 N 0.009 4.991 20 O -0.266 6.266 21 O -0.053 6.053 22 H 0.027 0.973 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.272 0.728 26 H 0.150 0.850 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -8.021 9.338 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.181 3.819 3 C -0.038 4.038 4 N -0.179 5.179 5 C -0.512 4.512 6 H 0.085 0.915 7 C -0.129 4.129 8 N -0.496 5.496 9 Si 0.731 3.269 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.010 3.990 14 C -0.139 4.139 15 C -0.099 4.099 16 C -0.155 4.155 17 C -0.086 4.086 18 C -0.111 4.111 19 N 0.513 4.487 20 O -0.447 6.447 21 O -0.283 6.283 22 H 0.046 0.954 23 H 0.109 0.891 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.168 0.832 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.363 -6.582 9.810 12.048 hybrid contribution 0.607 -0.729 -1.192 1.524 sum -1.756 -7.311 8.618 11.437 Atomic orbital electron populations 1.21924 0.94022 1.01992 1.01218 1.15122 0.94145 0.82098 0.90503 1.28874 0.90890 0.93694 0.90346 1.80846 1.11785 1.13773 1.11469 1.20521 1.35500 1.07448 0.87748 0.91531 1.24874 0.94003 0.94707 0.99326 1.69810 1.36584 1.18117 1.25128 0.86412 0.80041 0.79286 0.81187 1.19910 1.20827 1.19502 1.20192 0.90088 0.93629 0.95091 1.21309 1.00838 0.98307 0.93420 1.21473 0.95696 0.96133 0.96648 1.21021 0.92977 1.01729 0.99801 1.20934 1.01711 0.94463 0.91485 1.21003 0.89743 1.06110 0.94286 1.43544 1.01125 1.02658 1.01405 1.94394 1.00797 1.67400 1.82089 1.94789 1.82206 1.40717 1.10557 0.95354 0.89091 0.92257 0.91774 0.83206 0.84764 0.84643 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 6.86 37.16 0.25 -2.34 15 2 C 0.19 4.15 0.46 -159.60 -0.07 4.08 15 3 C 0.28 7.10 9.01 -20.76 -0.19 6.91 15 4 N -0.50 -13.67 18.41 42.16 0.78 -12.90 15 5 C -0.47 -11.58 4.82 -34.44 -0.17 -11.74 15 6 H 0.07 1.64 7.71 -52.48 -0.40 1.24 15 7 C 0.08 1.97 5.10 -17.82 -0.09 1.88 15 8 N -0.86 -22.56 10.56 55.43 0.59 -21.97 15 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 15 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 13 C 0.01 0.24 4.68 -104.62 -0.49 -0.25 15 14 C -0.12 -1.76 8.97 -39.58 -0.36 -2.11 15 15 C -0.08 -0.94 10.05 -39.58 -0.40 -1.34 15 16 C -0.14 -1.64 10.05 -39.58 -0.40 -2.04 15 17 C -0.07 -1.05 9.56 -39.58 -0.38 -1.43 15 18 C -0.03 -0.56 6.46 -79.95 -0.52 -1.07 15 19 N 0.01 0.20 4.32 33.96 0.15 0.35 15 20 O -0.27 -6.37 18.47 -29.46 -0.54 -6.91 15 21 O -0.05 -1.41 11.41 -29.46 -0.34 -1.74 15 22 H 0.03 0.47 7.33 -51.93 -0.38 0.09 15 23 H 0.09 2.01 6.58 -51.93 -0.34 1.67 15 24 H 0.06 1.02 7.69 -51.93 -0.40 0.62 15 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 26 H 0.15 1.86 5.91 -52.49 -0.31 1.55 15 27 H 0.13 1.04 8.06 -52.49 -0.42 0.62 15 28 H 0.14 1.14 8.06 -52.49 -0.42 0.72 15 29 H 0.14 2.07 7.63 -52.48 -0.40 1.67 15 LS Contribution 257.29 15.07 3.88 3.88 Total: -1.00 -30.50 257.29 -5.53 -36.03 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -2.22 Total: -2.52 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.80 Total: -9.46 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 1.51 Total: -34.52 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.88 Total: -8.65 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.50 -5.53 -36.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.204 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds