Wall clock time and date at job start Mon Mar 30 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47206 * 109.46713 * 2 1 4 4 N 2.60804 * 109.46825 * 359.97438 * 2 1 3 5 5 C 1.50697 * 109.47458 * 119.99739 * 2 1 3 6 6 H 1.07999 * 119.99802 * 122.82172 * 5 2 1 7 7 C 1.37878 * 120.00361 * 303.10236 * 5 2 1 8 8 N 1.31506 * 120.00141 * 179.97438 * 7 5 2 9 9 Si 1.86802 * 119.99567 * 359.97438 * 7 5 2 10 10 H 1.48502 * 109.47255 * 90.00485 * 9 7 5 11 11 H 1.48501 * 109.47038 * 210.00087 * 9 7 5 12 12 H 1.48494 * 109.47553 * 330.00124 * 9 7 5 13 13 C 1.50695 * 109.47418 * 240.00403 * 2 1 3 14 14 C 1.38259 * 119.99783 * 2.90614 * 13 2 1 15 15 C 1.38214 * 120.00327 * 179.79105 * 14 13 2 16 16 C 1.38263 * 119.99478 * 0.44007 * 15 14 13 17 17 C 1.38213 * 120.00301 * 359.81427 * 16 15 14 18 18 C 1.38212 * 120.00500 * 183.18025 * 13 2 1 19 19 N 1.48023 * 119.99785 * 359.97438 * 18 13 2 20 20 O 1.21796 * 119.99935 * 173.63217 * 19 18 13 21 21 O 1.21801 * 119.99895 * 353.63121 * 19 18 13 22 22 H 1.08998 * 109.47481 * 304.83958 * 1 2 3 23 23 H 1.08995 * 109.47384 * 64.84118 * 1 2 3 24 24 H 1.09002 * 109.47320 * 184.83948 * 1 2 3 25 25 H 0.97004 * 120.00018 * 180.02562 * 8 7 5 26 26 H 1.07998 * 120.00261 * 0.02562 * 14 13 2 27 27 H 1.07993 * 120.00932 * 180.27516 * 15 14 13 28 28 H 1.07999 * 119.99726 * 179.83520 * 16 15 14 29 29 H 1.07995 * 120.00579 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0205 1.3879 0.0000 4 7 2.3992 2.4589 -0.0011 5 6 2.0324 -0.7103 1.2304 6 1 2.6903 -1.5610 1.1320 7 6 1.6474 -0.2778 2.4817 8 7 2.0855 -0.8980 3.5554 9 14 0.5037 1.1893 2.6518 10 1 -0.9055 0.7209 2.6530 11 1 0.7913 1.8962 3.9256 12 1 0.7158 2.1172 1.5120 13 6 2.0324 -0.7103 -1.2305 14 6 1.1354 -1.1828 -2.1705 15 6 1.5962 -1.8305 -3.3012 16 6 2.9539 -2.0138 -3.4877 17 6 3.8503 -1.5461 -2.5454 18 6 3.3895 -0.8944 -1.4166 19 7 4.3495 -0.3933 -0.4074 20 8 5.5344 -0.6555 -0.5113 21 8 3.9546 0.2811 0.5267 22 1 -0.3634 0.5871 0.8434 23 1 -0.3634 0.4369 -0.9301 24 1 -0.3634 -1.0240 0.0867 25 1 1.8144 -0.5938 4.4358 26 1 0.0747 -1.0426 -2.0232 27 1 0.8959 -2.1957 -4.0377 28 1 3.3139 -2.5223 -4.3699 29 1 4.9108 -1.6896 -2.6909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259577946.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:21 Heat of formation + Delta-G solvation = 83.581995 kcal Electronic energy + Delta-G solvation = -18146.899055 eV Core-core repulsion = 15233.177384 eV Total energy + Delta-G solvation = -2913.721670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28420 -39.24393 -36.85568 -35.17901 -33.99892 -32.28985 -31.54047 -29.58019 -26.02024 -25.66783 -23.71046 -21.63661 -21.27568 -18.76574 -17.99758 -17.52289 -16.54808 -16.17083 -15.41534 -15.22722 -14.65447 -14.21976 -13.59426 -13.20800 -12.95825 -12.51863 -12.38122 -12.28183 -12.17916 -11.65521 -11.15338 -10.93496 -10.73014 -10.39120 -10.26373 -9.95279 -9.84994 -9.68154 -9.35294 -9.20320 -8.82158 -8.79622 -6.46464 -4.38025 0.53504 1.25927 2.11031 2.41807 3.08670 3.23817 3.27999 3.63822 3.79877 3.94765 4.13079 4.73621 4.77350 4.80648 4.96197 5.18470 5.26123 5.35826 5.53619 5.78151 5.86707 5.97033 6.09126 6.22002 6.30941 6.40291 6.66953 6.69871 7.03196 7.49151 7.97233 8.39066 8.71587 8.81289 9.05257 10.62772 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.011470 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.306648 B = 2440.480908 C = 2857.795452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 C 0.249 3.751 4 N -0.480 5.480 5 C -0.465 4.465 6 H 0.085 0.915 7 C 0.090 3.910 8 N -0.851 5.851 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.244 1.244 13 C 0.013 3.987 14 C -0.120 4.120 15 C -0.084 4.084 16 C -0.131 4.131 17 C -0.068 4.068 18 C -0.016 4.016 19 N 0.006 4.994 20 O -0.275 6.275 21 O -0.054 6.054 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.276 0.724 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -3.597 -12.237 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.152 3.848 3 C -0.066 4.066 4 N -0.159 5.159 5 C -0.505 4.505 6 H 0.103 0.897 7 C -0.120 4.120 8 N -0.487 5.487 9 Si 0.697 3.303 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.169 1.169 13 C 0.011 3.989 14 C -0.139 4.139 15 C -0.102 4.102 16 C -0.149 4.149 17 C -0.087 4.087 18 C -0.100 4.100 19 N 0.505 4.495 20 O -0.450 6.450 21 O -0.282 6.282 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.167 0.833 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.769 -2.337 -12.648 13.717 hybrid contribution -0.275 0.282 0.693 0.797 sum -5.044 -2.055 -11.954 13.136 Atomic orbital electron populations 1.22319 0.94320 1.03301 1.00756 1.15505 0.93630 0.82301 0.93364 1.29193 0.91617 0.93976 0.91834 1.80956 1.11113 1.13733 1.10110 1.20475 1.29950 1.13292 0.86796 0.89678 1.24902 0.95480 0.96244 0.95325 1.69817 1.40931 1.39416 0.98504 0.87201 0.80491 0.83568 0.79049 1.19856 1.21557 1.16852 1.19671 0.90299 0.94078 0.94876 1.21270 1.00632 0.98962 0.92995 1.21437 0.95742 0.96056 0.96956 1.21055 0.92964 1.01528 0.99392 1.20946 1.01853 0.94521 0.91413 1.20979 0.89618 1.06697 0.92724 1.43204 1.00932 1.04036 1.01349 1.94393 0.99923 1.67874 1.82793 1.94633 1.80563 1.30897 1.22149 0.92541 0.93022 0.89920 0.91412 0.83280 0.84664 0.84528 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 6.58 37.16 0.24 -2.37 15 2 C 0.16 3.33 0.46 -159.60 -0.07 3.25 15 3 C 0.25 5.86 7.33 -20.76 -0.15 5.70 15 4 N -0.48 -11.95 17.84 42.15 0.75 -11.20 15 5 C -0.47 -11.74 5.56 -34.44 -0.19 -11.93 15 6 H 0.09 2.38 7.29 -52.49 -0.38 2.00 15 7 C 0.09 2.35 5.43 -17.82 -0.10 2.26 15 8 N -0.85 -23.90 13.96 55.43 0.77 -23.13 15 9 Si 0.87 20.17 23.51 -169.99 -4.00 16.17 15 10 H -0.27 -5.81 6.93 56.52 0.39 -5.42 15 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 12 H -0.24 -5.67 4.45 56.52 0.25 -5.41 15 13 C 0.01 0.25 4.70 -104.63 -0.49 -0.25 15 14 C -0.12 -1.65 9.00 -39.58 -0.36 -2.00 15 15 C -0.08 -0.92 10.05 -39.58 -0.40 -1.32 15 16 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 15 17 C -0.07 -1.06 9.56 -39.58 -0.38 -1.44 15 18 C -0.02 -0.33 6.31 -79.95 -0.50 -0.83 15 19 N 0.01 0.14 4.12 33.96 0.14 0.28 15 20 O -0.27 -6.68 18.47 -29.46 -0.54 -7.23 15 21 O -0.05 -1.45 11.38 -29.46 -0.34 -1.78 15 22 H 0.06 1.07 3.04 -51.93 -0.16 0.91 15 23 H 0.05 0.72 7.05 -51.93 -0.37 0.36 15 24 H 0.08 1.28 7.92 -51.93 -0.41 0.87 15 25 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 26 H 0.15 1.64 5.88 -52.49 -0.31 1.33 15 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 29 H 0.14 2.09 7.63 -52.49 -0.40 1.69 15 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -31.67 246.02 -4.46 -36.13 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -2.17 Total: -2.13 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.79 Total: -10.84 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 1.67 Total: -34.04 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.88 Total: -9.01 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.00 Total: 16.17 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.67 -4.46 -36.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577946.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.716 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds