Wall clock time and date at job start Mon Mar 30 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47206 * 109.46713 * 2 1 4 4 N 2.60804 * 109.46825 * 359.97438 * 2 1 3 5 5 C 1.50697 * 109.47458 * 119.99739 * 2 1 3 6 6 H 1.07999 * 119.99802 * 122.82172 * 5 2 1 7 7 C 1.37878 * 120.00361 * 303.10236 * 5 2 1 8 8 N 1.31506 * 120.00141 * 179.97438 * 7 5 2 9 9 Si 1.86802 * 119.99567 * 359.97438 * 7 5 2 10 10 H 1.48502 * 109.47255 * 90.00485 * 9 7 5 11 11 H 1.48501 * 109.47038 * 210.00087 * 9 7 5 12 12 H 1.48494 * 109.47553 * 330.00124 * 9 7 5 13 13 C 1.50695 * 109.47418 * 240.00403 * 2 1 3 14 14 C 1.38259 * 119.99783 * 2.90614 * 13 2 1 15 15 C 1.38214 * 120.00327 * 179.79105 * 14 13 2 16 16 C 1.38263 * 119.99478 * 0.44007 * 15 14 13 17 17 C 1.38213 * 120.00301 * 359.81427 * 16 15 14 18 18 C 1.38212 * 120.00500 * 183.18025 * 13 2 1 19 19 N 1.48023 * 119.99785 * 359.97438 * 18 13 2 20 20 O 1.21796 * 119.99935 * 173.63217 * 19 18 13 21 21 O 1.21801 * 119.99895 * 353.63121 * 19 18 13 22 22 H 1.08998 * 109.47481 * 304.83958 * 1 2 3 23 23 H 1.08995 * 109.47384 * 64.84118 * 1 2 3 24 24 H 1.09002 * 109.47320 * 184.83948 * 1 2 3 25 25 H 0.97004 * 120.00018 * 180.02562 * 8 7 5 26 26 H 1.07998 * 120.00261 * 0.02562 * 14 13 2 27 27 H 1.07993 * 120.00932 * 180.27516 * 15 14 13 28 28 H 1.07999 * 119.99726 * 179.83520 * 16 15 14 29 29 H 1.07995 * 120.00579 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0205 1.3879 0.0000 4 7 2.3992 2.4589 -0.0011 5 6 2.0324 -0.7103 1.2304 6 1 2.6903 -1.5610 1.1320 7 6 1.6474 -0.2778 2.4817 8 7 2.0855 -0.8980 3.5554 9 14 0.5037 1.1893 2.6518 10 1 -0.9055 0.7209 2.6530 11 1 0.7913 1.8962 3.9256 12 1 0.7158 2.1172 1.5120 13 6 2.0324 -0.7103 -1.2305 14 6 1.1354 -1.1828 -2.1705 15 6 1.5962 -1.8305 -3.3012 16 6 2.9539 -2.0138 -3.4877 17 6 3.8503 -1.5461 -2.5454 18 6 3.3895 -0.8944 -1.4166 19 7 4.3495 -0.3933 -0.4074 20 8 5.5344 -0.6555 -0.5113 21 8 3.9546 0.2811 0.5267 22 1 -0.3634 0.5871 0.8434 23 1 -0.3634 0.4369 -0.9301 24 1 -0.3634 -1.0240 0.0867 25 1 1.8144 -0.5938 4.4358 26 1 0.0747 -1.0426 -2.0232 27 1 0.8959 -2.1957 -4.0377 28 1 3.3139 -2.5223 -4.3699 29 1 4.9108 -1.6896 -2.6909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259577946.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:21 Heat of formation + Delta-G solvation = 61.383539 kcal Electronic energy + Delta-G solvation = -18147.861652 eV Core-core repulsion = 15233.177384 eV Total energy + Delta-G solvation = -2914.684268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.99027 -40.64359 -38.44077 -37.04794 -35.74019 -34.06033 -32.80441 -30.89335 -27.62715 -27.27026 -25.25061 -23.06222 -22.66307 -20.43329 -19.68637 -19.29200 -18.16891 -17.74096 -17.20264 -16.50197 -15.89457 -15.49508 -15.15208 -14.94301 -14.53321 -14.16822 -14.04631 -13.63918 -13.46566 -12.96765 -12.72164 -12.66577 -12.29986 -12.12066 -11.99845 -11.83252 -11.69905 -11.42776 -11.11635 -10.76541 -10.35319 -10.01644 -8.43303 -6.37725 -0.97335 0.14227 0.54928 0.84671 1.23255 1.37954 1.39112 2.03012 2.14063 2.22835 2.49486 2.97757 3.41286 3.59035 3.63470 3.98634 4.14184 4.21810 4.34293 4.46038 4.58359 4.83268 4.89893 5.03907 5.17393 5.27865 5.34039 5.36289 5.56728 5.79506 6.02347 6.41862 6.85302 6.92473 7.11223 8.71526 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.011470 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.306648 B = 2440.480908 C = 2857.795452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.150 3.850 3 C 0.260 3.740 4 N -0.520 5.520 5 C -0.455 4.455 6 H 0.040 0.960 7 C 0.041 3.959 8 N -0.914 5.914 9 Si 0.917 3.083 10 H -0.235 1.235 11 H -0.312 1.312 12 H -0.246 1.246 13 C -0.013 4.013 14 C -0.115 4.115 15 C -0.048 4.048 16 C -0.110 4.110 17 C -0.076 4.076 18 C -0.060 4.060 19 N 0.012 4.988 20 O -0.270 6.270 21 O -0.127 6.127 22 H 0.040 0.960 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.272 0.728 26 H 0.185 0.815 27 H 0.197 0.803 28 H 0.187 0.813 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 -5.046 -17.022 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.146 3.854 3 C -0.054 4.054 4 N -0.201 5.201 5 C -0.495 4.495 6 H 0.059 0.941 7 C -0.162 4.162 8 N -0.553 5.553 9 Si 0.744 3.256 10 H -0.159 1.159 11 H -0.241 1.241 12 H -0.171 1.171 13 C -0.015 4.015 14 C -0.133 4.133 15 C -0.066 4.066 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.143 4.143 19 N 0.508 4.492 20 O -0.454 6.454 21 O -0.344 6.344 22 H 0.059 0.941 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.202 0.798 27 H 0.214 0.786 28 H 0.204 0.796 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.514 -3.749 -17.386 19.307 hybrid contribution 0.752 0.545 1.764 1.994 sum -6.762 -3.203 -15.622 17.321 Atomic orbital electron populations 1.22338 0.90862 1.04991 1.02388 1.15711 0.96119 0.80539 0.93068 1.29827 0.90539 0.94410 0.90632 1.80923 1.12454 1.15261 1.11443 1.20427 1.28311 1.12180 0.88554 0.94127 1.25570 0.97088 0.98285 0.95219 1.69948 1.44391 1.42006 0.98947 0.86475 0.80989 0.80722 0.77389 1.15897 1.24139 1.17074 1.19776 0.90495 0.95819 0.95436 1.21773 1.01451 0.97736 0.92324 1.22185 0.96361 0.91980 0.96052 1.21711 0.92786 0.99164 0.99119 1.21315 1.03224 0.94158 0.90826 1.21383 0.89352 1.10389 0.93217 1.44006 1.01464 1.02110 1.01637 1.94326 1.01768 1.66594 1.82716 1.94648 1.80955 1.34272 1.24536 0.94122 0.88591 0.87639 0.91820 0.79810 0.78635 0.79556 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 6.58 71.98 0.47 -4.24 15 2 C 0.15 6.29 0.46 -55.48 -0.03 6.27 15 3 C 0.26 12.40 7.33 89.44 0.66 13.05 15 4 N -0.52 -26.60 17.84 20.01 0.36 -26.24 15 5 C -0.45 -23.94 5.56 25.60 0.14 -23.79 15 6 H 0.04 2.44 7.29 -2.91 -0.02 2.41 15 7 C 0.04 2.26 5.43 84.66 0.46 2.72 15 8 N -0.91 -55.02 13.96 21.45 0.30 -54.72 15 9 Si 0.92 42.95 23.51 68.60 1.61 44.56 15 10 H -0.23 -9.43 6.93 99.48 0.69 -8.74 15 11 H -0.31 -15.63 7.11 99.48 0.71 -14.93 15 12 H -0.25 -11.45 4.45 99.48 0.44 -11.01 15 13 C -0.01 -0.45 4.70 -19.87 -0.09 -0.54 15 14 C -0.11 -2.45 9.00 22.27 0.20 -2.25 15 15 C -0.05 -0.66 10.05 22.27 0.22 -0.44 15 16 C -0.11 -1.80 10.05 22.27 0.22 -1.57 15 17 C -0.08 -2.13 9.56 22.27 0.21 -1.92 15 18 C -0.06 -2.32 6.31 36.37 0.23 -2.09 15 19 N 0.01 0.58 4.12 -46.46 -0.19 0.39 15 20 O -0.27 -13.60 18.47 18.89 0.35 -13.25 15 21 O -0.13 -7.18 11.38 18.89 0.21 -6.96 15 22 H 0.04 1.43 3.04 -2.39 -0.01 1.42 15 23 H 0.10 2.17 7.05 -2.39 -0.02 2.15 15 24 H 0.10 2.84 7.92 -2.39 -0.02 2.82 15 25 H 0.27 15.45 8.31 -92.70 -0.77 14.68 15 26 H 0.18 2.62 5.88 -2.91 -0.02 2.61 15 27 H 0.20 0.59 8.06 -2.91 -0.02 0.56 15 28 H 0.19 1.35 8.06 -2.91 -0.02 1.32 15 29 H 0.15 3.94 7.63 -2.91 -0.02 3.92 15 Total: -1.00 -80.07 246.02 6.26 -73.80 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 0.92 Total: -2.77 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 2.70 Total: -14.80 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: 0.46 Total: -80.58 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.56 Total: -20.21 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.61 Total: 44.56 kcal Total: -80.07 6.26 -73.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577946.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.187 kcal (2) G-P(sol) polarization free energy of solvation -80.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds