Wall clock time and date at job start Mon Mar 30 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38435 * 119.41910 * 2 1 4 4 C 1.38247 * 119.34001 * 180.02562 * 3 2 1 5 5 C 1.40358 * 118.26283 * 0.02562 * 4 3 2 6 6 C 1.47202 * 120.59392 * 179.97438 * 5 4 3 7 7 S 1.72007 * 127.40445 * 353.77581 * 6 5 4 8 8 N 1.69393 * 96.23545 * 180.22230 * 7 6 5 9 9 C 1.29265 * 108.41656 * 359.79338 * 8 7 6 10 10 C 1.39817 * 117.06180 * 0.02562 * 9 8 7 11 11 C 1.40824 * 123.45252 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00370 * 139.76588 * 11 10 9 13 13 C 1.39896 * 119.99795 * 319.76847 * 11 10 9 14 14 N 1.30935 * 119.99934 * 348.28623 * 13 11 10 15 15 Si 1.86804 * 119.99968 * 168.28801 * 13 11 10 16 16 H 1.48494 * 109.46843 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.46722 * 299.99910 * 15 13 11 18 18 H 1.48494 * 109.47353 * 59.99627 * 15 13 11 19 19 C 1.39908 * 118.81635 * 0.24822 * 5 4 3 20 20 N 1.31641 * 120.51101 * 359.47687 * 19 5 4 21 21 H 1.09008 * 109.47069 * 90.00371 * 1 2 3 22 22 H 1.09002 * 109.47231 * 209.99410 * 1 2 3 23 23 H 1.08994 * 109.47181 * 330.00045 * 1 2 3 24 24 H 1.07992 * 120.33041 * 0.04761 * 3 2 1 25 25 H 1.07999 * 120.86801 * 179.97438 * 4 3 2 26 26 H 1.07995 * 121.47292 * 180.02562 * 9 8 7 27 27 H 0.97002 * 120.00126 * 354.15640 * 14 13 11 28 28 H 1.08000 * 119.74866 * 179.74929 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2058 0.0000 4 6 3.5694 1.2039 -0.0005 5 6 4.2324 -0.0332 -0.0016 6 6 5.7031 -0.0951 -0.0028 7 16 6.8040 1.2181 -0.1512 8 7 8.2155 0.2856 -0.0642 9 6 7.8778 -0.9544 0.0745 10 6 6.5099 -1.2400 0.1193 11 6 5.9930 -2.5417 0.2660 12 1 5.1367 -2.7144 0.9010 13 6 6.5888 -3.6112 -0.4109 14 7 7.4712 -3.3813 -1.3506 15 14 6.1256 -5.3674 0.0259 16 1 6.8923 -6.3088 -0.8291 17 1 6.4455 -5.6232 1.4533 18 1 4.6712 -5.5662 -0.1987 19 6 3.4704 -1.2066 -0.0074 20 7 2.1552 -1.1495 -0.0014 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3633 0.8899 0.5138 24 1 1.6429 2.1387 0.0008 25 1 4.1248 2.1302 -0.0010 26 1 8.6196 -1.7354 0.1524 27 1 7.6496 -2.4717 -1.6363 28 1 3.9649 -2.1667 -0.0124 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259598573.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:51 Heat of formation + Delta-G solvation = 33.626705 kcal Electronic energy + Delta-G solvation = -14825.810033 eV Core-core repulsion = 12352.675010 eV Total energy + Delta-G solvation = -2473.135023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97132 -39.54071 -35.58061 -34.60589 -33.15709 -31.52277 -28.70468 -27.09446 -24.89475 -24.31020 -22.72967 -21.26559 -19.71943 -18.23224 -17.05492 -16.77637 -16.56978 -15.73457 -15.67102 -15.34197 -14.92499 -14.35139 -14.25884 -13.77699 -13.73519 -13.25483 -12.97815 -12.86402 -12.45947 -12.13720 -11.99032 -11.86331 -11.30907 -11.10782 -11.00123 -10.42488 -10.28501 -9.46096 -9.33004 -9.01460 -6.55824 -0.49868 0.39968 0.76918 1.00056 1.28615 1.44653 1.56723 1.82751 1.95046 2.32481 2.87877 3.06263 3.57223 3.85534 3.99412 4.14769 4.31488 4.40851 4.55396 4.78083 4.82057 4.87111 4.95772 5.11490 5.23151 5.32970 5.43274 5.52446 5.71879 5.86049 6.01576 6.28571 6.65502 7.19840 7.97871 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.010023 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.139205 B = 2792.972592 C = 4233.510844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.075 3.925 3 C -0.154 4.154 4 C -0.108 4.108 5 C -0.025 4.025 6 C -0.324 4.324 7 S 0.174 5.826 8 N -0.483 5.483 9 C 0.083 3.917 10 C 0.004 3.996 11 C -0.489 4.489 12 H 0.093 0.907 13 C 0.004 3.996 14 N -0.820 5.820 15 Si 1.115 2.885 16 H -0.272 1.272 17 H -0.256 1.256 18 H -0.260 1.260 19 C 0.062 3.938 20 N -0.498 5.498 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.169 0.831 25 H 0.137 0.863 26 H 0.168 0.832 27 H 0.279 0.721 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 3.682 2.287 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.173 4.173 4 C -0.135 4.135 5 C -0.030 4.030 6 C -0.451 4.451 7 S 0.326 5.674 8 N -0.300 5.300 9 C -0.122 4.122 10 C -0.010 4.010 11 C -0.522 4.522 12 H 0.111 0.889 13 C -0.211 4.211 14 N -0.445 5.445 15 Si 0.932 3.068 16 H -0.197 1.197 17 H -0.181 1.181 18 H -0.185 1.185 19 C -0.096 4.096 20 N -0.208 5.208 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.116 0.884 24 H 0.186 0.814 25 H 0.155 0.845 26 H 0.185 0.815 27 H 0.092 0.908 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.111 3.419 1.689 8.963 hybrid contribution 0.218 0.714 0.358 0.828 sum -7.893 4.133 2.048 9.142 Atomic orbital electron populations 1.20699 0.86343 1.04113 1.03631 1.21994 0.98742 0.88294 0.97365 1.22083 0.93565 1.00232 1.01410 1.21813 0.95462 0.96595 0.99595 1.18829 0.89946 0.94947 0.99261 1.23235 0.96319 0.97749 1.27783 1.82476 0.93693 1.15692 1.75586 1.75922 1.22636 1.08212 1.23242 1.23154 0.96999 0.93291 0.98723 1.18517 0.90134 0.95683 0.96707 1.20319 1.15318 0.91188 1.25419 0.88915 1.28431 0.90928 1.09914 0.91790 1.70668 1.25671 1.26157 1.22020 0.82993 0.77774 0.68182 0.77898 1.19666 1.18068 1.18452 1.23757 0.88812 0.99686 0.97351 1.67520 1.09726 1.30553 1.13003 0.89762 0.91184 0.88377 0.81359 0.84537 0.81504 0.90847 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 10.16 71.24 0.72 -1.24 15 2 C 0.07 2.39 6.78 42.59 0.29 2.68 15 3 C -0.15 -4.56 9.72 22.32 0.22 -4.34 15 4 C -0.11 -3.87 9.76 22.79 0.22 -3.65 15 5 C -0.03 -1.10 5.89 -20.00 -0.12 -1.22 15 6 C -0.32 -15.27 6.50 25.20 0.16 -15.11 15 7 S 0.17 7.49 22.91 -56.49 -1.29 6.19 15 8 N -0.48 -22.72 11.96 -59.86 -0.72 -23.43 15 9 C 0.08 4.01 9.11 85.45 0.78 4.79 15 10 C 0.00 0.17 5.05 -21.69 -0.11 0.07 15 11 C -0.49 -23.73 7.04 23.30 0.16 -23.57 15 12 H 0.09 4.43 6.00 -2.91 -0.02 4.41 15 13 C 0.00 0.20 5.31 85.23 0.45 0.66 15 14 N -0.82 -41.15 12.91 21.82 0.28 -40.87 15 15 Si 1.11 39.92 29.95 68.60 2.05 41.97 15 16 H -0.27 -9.73 7.11 99.48 0.71 -9.03 15 17 H -0.26 -8.48 7.11 99.48 0.71 -7.78 15 18 H -0.26 -8.86 7.11 99.48 0.71 -8.16 15 19 C 0.06 2.74 10.33 85.13 0.88 3.62 15 20 N -0.50 -19.86 10.25 -182.46 -1.87 -21.73 15 21 H 0.08 1.61 8.14 -2.38 -0.02 1.59 15 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.10 1.52 8.07 -2.39 -0.02 1.50 15 24 H 0.17 3.43 8.06 -2.91 -0.02 3.41 15 25 H 0.14 4.41 7.57 -2.91 -0.02 4.38 15 26 H 0.17 7.89 7.47 -2.91 -0.02 7.87 15 27 H 0.28 14.62 6.32 -92.71 -0.59 14.04 15 28 H 0.17 7.80 4.25 -2.91 -0.01 7.79 15 Total: -1.00 -57.12 258.96 3.50 -53.62 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 1.38 Total: 21.56 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 3.66 Total: -37.32 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -2.30 Total: -86.03 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.05 Total: 41.97 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.29 Total: 6.19 kcal Total: -57.12 3.50 -53.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598573.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.244 kcal (2) G-P(sol) polarization free energy of solvation -57.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds