Wall clock time and date at job start Mon Mar 30 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30333 * 121.04622 * 90.02247 * 10 9 7 12 12 S 1.69960 * 105.74509 * 179.97438 * 11 10 9 13 13 C 1.72310 * 94.54686 * 0.02562 * 12 11 10 14 14 C 1.47921 * 127.51037 * 179.97438 * 13 12 11 15 15 C 1.39521 * 120.14039 * 179.69600 * 14 13 12 16 16 C 1.37971 * 119.86029 * 179.74479 * 15 14 13 17 17 C 1.38354 * 120.13853 * 0.53195 * 16 15 14 18 18 C 1.38340 * 120.28098 * 359.74332 * 17 16 15 19 19 C 1.37971 * 120.14343 * 359.97438 * 18 17 16 20 20 N 1.30927 * 121.04116 * 269.74049 * 10 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08004 * 120.06966 * 0.02562 * 15 14 13 25 25 H 1.07999 * 119.93301 * 180.27114 * 16 15 14 26 26 H 1.08000 * 119.86007 * 179.71902 * 17 16 15 27 27 H 1.08000 * 119.93219 * 179.97438 * 18 17 16 28 28 H 1.07996 * 120.07861 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6666 -4.1608 1.1040 12 16 3.7315 -5.4052 0.6501 13 6 3.5236 -5.1525 -1.0417 14 6 4.1641 -5.8956 -2.1488 15 6 3.8780 -5.5634 -3.4733 16 6 4.4828 -6.2568 -4.5014 17 6 5.3628 -7.2869 -4.2212 18 6 5.6462 -7.6250 -2.9101 19 6 5.0525 -6.9355 -1.8729 20 7 2.6652 -4.1561 -1.1344 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 3.1881 -4.7621 -3.6934 25 1 4.2655 -5.9977 -5.5272 26 1 5.8301 -7.8297 -5.0295 27 1 6.3338 -8.4304 -2.6978 28 1 5.2749 -7.2000 -0.8497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259605041.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:16 Heat of formation + Delta-G solvation = 69.946398 kcal Electronic energy + Delta-G solvation = -14212.411699 eV Core-core repulsion = 11740.851615 eV Total energy + Delta-G solvation = -2471.560083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83605 -38.90658 -33.58061 -32.62635 -31.12750 -30.30866 -28.99709 -25.31149 -23.57615 -22.73799 -21.28775 -18.96618 -18.27970 -17.02685 -16.51090 -15.74715 -14.84176 -14.67399 -14.59998 -14.05934 -13.55870 -13.08305 -12.95521 -12.21150 -11.95725 -11.54667 -11.36254 -11.27916 -10.94757 -10.74594 -10.67358 -10.32934 -9.90642 -9.59372 -9.25497 -9.10668 -8.96959 -8.48960 -8.22926 -6.12009 -4.15467 0.30156 1.26383 1.59701 1.64972 2.25653 3.25548 3.31168 3.34454 3.40097 3.77182 3.99918 4.40836 4.76241 4.80794 4.97575 5.12384 5.24978 5.32899 5.44483 5.72118 5.90372 6.13767 6.24998 6.34429 6.39710 6.60855 6.77495 7.30966 7.35312 7.81395 8.12504 8.29479 8.83771 9.47037 10.98788 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.005556 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.420940 B = 5038.430070 C = 5542.435448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.099 3.901 10 C 0.308 3.692 11 N -0.466 5.466 12 S 0.163 5.837 13 C 0.113 3.887 14 C -0.021 4.021 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.092 4.092 20 N -0.491 5.491 21 H 0.266 0.734 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.140 0.860 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.995 -14.917 -7.056 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.057 3.943 10 C 0.021 3.979 11 N -0.294 5.294 12 S 0.305 5.695 13 C -0.172 4.172 14 C -0.025 4.025 15 C -0.088 4.088 16 C -0.142 4.142 17 C -0.124 4.124 18 C -0.141 4.141 19 C -0.113 4.113 20 N -0.212 5.212 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.158 0.842 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.896 -14.910 -5.672 18.772 hybrid contribution 0.168 1.336 -0.726 1.530 sum 10.064 -13.574 -6.398 18.069 Atomic orbital electron populations 1.69931 1.05982 1.27307 1.49716 1.24928 0.94959 0.99248 0.94782 0.86482 0.79481 0.82276 0.78796 1.20052 1.20992 1.20087 1.20766 0.92904 0.89274 1.52214 0.92649 1.18163 0.90472 0.85674 0.99978 1.24694 0.96054 0.96261 0.80929 1.77903 1.15203 1.09981 1.26283 1.84425 1.46105 1.37447 1.01497 1.26789 0.96396 0.95675 0.98385 1.17723 0.98185 0.96087 0.90464 1.21458 0.97828 0.98639 0.90826 1.21175 0.97393 0.96262 0.99353 1.21327 0.97389 0.96951 0.96728 1.21010 1.00420 1.00230 0.92412 1.21232 0.95641 0.94450 0.99990 1.67608 1.12826 1.09970 1.30779 0.92482 0.93231 0.92839 0.84226 0.85285 0.85692 0.85347 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 15 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.51 -14.80 9.09 -34.44 -0.31 -15.11 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 9 C 0.10 2.68 5.51 -29.03 -0.16 2.52 15 10 C 0.31 7.45 6.75 -159.17 -1.07 6.37 15 11 N -0.47 -10.74 12.16 29.62 0.36 -10.38 15 12 S 0.16 2.90 22.96 -107.50 -2.47 0.43 15 13 C 0.11 2.06 7.39 -13.58 -0.10 1.96 15 14 C -0.02 -0.30 5.87 -104.97 -0.62 -0.92 15 15 C -0.07 -0.88 9.72 -39.20 -0.38 -1.26 15 16 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 15 17 C -0.10 -0.92 10.04 -39.50 -0.40 -1.32 15 18 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 15 19 C -0.09 -1.05 9.64 -39.20 -0.38 -1.43 15 20 N -0.49 -10.83 10.34 -11.80 -0.12 -10.95 15 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.05 1.39 8.14 -51.93 -0.42 0.97 15 23 H 0.05 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.14 2.01 7.92 -52.48 -0.42 1.60 15 25 H 0.13 1.02 8.06 -52.49 -0.42 0.60 15 26 H 0.13 0.75 8.06 -52.49 -0.42 0.33 15 27 H 0.13 0.81 8.06 -52.49 -0.42 0.39 15 28 H 0.13 1.28 7.45 -52.49 -0.39 0.89 15 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -31.59 271.01 -9.20 -40.79 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -2.46 Total: -4.61 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -4.31 Total: -10.66 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.97 Total: -46.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.47 Total: 0.43 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.59 -9.20 -40.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605041.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.737 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds