Wall clock time and date at job start Mon Mar 30 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30333 * 121.04622 * 90.02247 * 10 9 7 12 12 S 1.69960 * 105.74509 * 179.97438 * 11 10 9 13 13 C 1.72310 * 94.54686 * 0.02562 * 12 11 10 14 14 C 1.47921 * 127.51037 * 179.97438 * 13 12 11 15 15 C 1.39521 * 120.14039 * 179.69600 * 14 13 12 16 16 C 1.37971 * 119.86029 * 179.74479 * 15 14 13 17 17 C 1.38354 * 120.13853 * 0.53195 * 16 15 14 18 18 C 1.38340 * 120.28098 * 359.74332 * 17 16 15 19 19 C 1.37971 * 120.14343 * 359.97438 * 18 17 16 20 20 N 1.30927 * 121.04116 * 269.74049 * 10 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08004 * 120.06966 * 0.02562 * 15 14 13 25 25 H 1.07999 * 119.93301 * 180.27114 * 16 15 14 26 26 H 1.08000 * 119.86007 * 179.71902 * 17 16 15 27 27 H 1.08000 * 119.93219 * 179.97438 * 18 17 16 28 28 H 1.07996 * 120.07861 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6666 -4.1608 1.1040 12 16 3.7315 -5.4052 0.6501 13 6 3.5236 -5.1525 -1.0417 14 6 4.1641 -5.8956 -2.1488 15 6 3.8780 -5.5634 -3.4733 16 6 4.4828 -6.2568 -4.5014 17 6 5.3628 -7.2869 -4.2212 18 6 5.6462 -7.6250 -2.9101 19 6 5.0525 -6.9355 -1.8729 20 7 2.6652 -4.1561 -1.1344 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 3.1881 -4.7621 -3.6934 25 1 4.2655 -5.9977 -5.5272 26 1 5.8301 -7.8297 -5.0295 27 1 6.3338 -8.4304 -2.6978 28 1 5.2749 -7.2000 -0.8497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259605041.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:16 Heat of formation + Delta-G solvation = 50.573283 kcal Electronic energy + Delta-G solvation = -14213.251780 eV Core-core repulsion = 11740.851615 eV Total energy + Delta-G solvation = -2472.400164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37018 -39.91468 -35.52170 -34.22599 -31.99652 -31.55483 -31.05526 -26.90682 -25.33903 -23.64081 -22.55023 -20.57594 -19.76216 -18.72166 -18.08867 -16.82658 -16.58068 -16.26962 -15.71828 -15.26296 -14.66194 -14.38291 -14.37555 -13.87170 -13.73500 -13.28605 -12.91855 -12.64186 -12.56976 -12.29347 -12.02521 -11.92451 -11.87919 -11.57185 -10.83169 -10.69299 -10.38271 -9.94153 -9.49919 -8.31002 -6.44248 -1.01516 0.11953 0.43043 0.49851 0.62986 1.35961 1.40236 1.48143 1.67070 2.36090 2.63113 2.84594 3.02352 3.70485 3.97583 4.04399 4.27004 4.40916 4.49379 4.54999 4.70934 4.89870 5.09838 5.11526 5.18877 5.44338 5.49673 5.53639 5.57352 5.94000 5.96945 6.59764 6.63248 7.22799 8.80316 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.005556 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.420940 B = 5038.430070 C = 5542.435448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.109 3.891 10 C 0.297 3.703 11 N -0.516 5.516 12 S 0.235 5.765 13 C 0.125 3.875 14 C -0.060 4.060 15 C -0.083 4.083 16 C -0.124 4.124 17 C -0.084 4.084 18 C -0.115 4.115 19 C -0.089 4.089 20 N -0.532 5.532 21 H 0.271 0.729 22 H 0.026 0.974 23 H 0.032 0.968 24 H 0.115 0.885 25 H 0.153 0.847 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.887 -16.699 -8.507 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.067 3.933 10 C 0.009 3.991 11 N -0.345 5.345 12 S 0.379 5.621 13 C -0.158 4.158 14 C -0.064 4.064 15 C -0.106 4.106 16 C -0.142 4.142 17 C -0.103 4.103 18 C -0.133 4.133 19 C -0.111 4.111 20 N -0.254 5.254 21 H 0.080 0.920 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.133 0.867 25 H 0.170 0.830 26 H 0.184 0.816 27 H 0.185 0.815 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.795 -16.715 -7.117 22.221 hybrid contribution -0.588 1.624 -0.412 1.776 sum 12.206 -15.092 -7.529 20.819 Atomic orbital electron populations 1.70040 1.07491 1.28608 1.49869 1.25863 0.95923 1.02969 0.93842 0.85391 0.78338 0.77587 0.79077 1.19225 1.19562 1.19484 1.20977 0.92601 0.90682 1.53105 0.93587 1.17744 0.90824 0.87101 0.97675 1.24068 0.96590 0.96380 0.82081 1.77573 1.17415 1.12490 1.27035 1.83912 1.43589 1.34395 1.00230 1.27490 0.94365 0.94012 0.99948 1.17910 1.00699 0.98115 0.89666 1.21449 0.98496 0.99066 0.91553 1.21473 0.97056 0.96145 0.99544 1.21859 0.95256 0.95330 0.97904 1.21492 0.99823 1.00189 0.91773 1.21469 0.94613 0.93342 1.01645 1.67543 1.15330 1.12323 1.30226 0.91964 0.95630 0.95032 0.86665 0.82976 0.81649 0.81481 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.03 13.29 21.45 0.28 -55.75 15 2 C 0.01 0.81 5.46 84.66 0.46 1.27 15 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 7 C -0.53 -32.39 9.09 25.60 0.23 -32.16 15 8 H 0.05 2.80 7.74 -2.91 -0.02 2.77 15 9 C 0.11 6.30 5.51 29.10 0.16 6.46 15 10 C 0.30 15.22 6.75 139.44 0.94 16.16 15 11 N -0.52 -24.75 12.16 -60.21 -0.73 -25.48 15 12 S 0.23 8.28 22.96 -56.49 -1.30 6.99 15 13 C 0.12 4.62 7.39 87.26 0.65 5.26 15 14 C -0.06 -1.69 5.87 -20.09 -0.12 -1.81 15 15 C -0.08 -2.20 9.72 22.52 0.22 -1.98 15 16 C -0.12 -2.18 10.03 22.23 0.22 -1.95 15 17 C -0.08 -1.04 10.04 22.32 0.22 -0.82 15 18 C -0.12 -1.52 10.03 22.23 0.22 -1.29 15 19 C -0.09 -1.78 9.64 22.52 0.22 -1.56 15 20 N -0.53 -24.72 10.34 -191.24 -1.98 -26.69 15 21 H 0.27 15.32 8.31 -92.70 -0.77 14.55 15 22 H 0.03 1.56 8.14 -2.38 -0.02 1.54 15 23 H 0.03 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.12 3.53 7.92 -2.91 -0.02 3.51 15 25 H 0.15 1.91 8.06 -2.91 -0.02 1.89 15 26 H 0.17 0.83 8.06 -2.91 -0.02 0.81 15 27 H 0.17 0.99 8.06 -2.91 -0.02 0.97 15 28 H 0.14 2.35 7.45 -2.91 -0.02 2.33 15 Total: -1.00 -72.79 271.01 2.91 -69.88 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: 1.17 Total: -3.99 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 3.43 Total: -12.42 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -2.42 Total: -107.92 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 8.28 SS G_CDS: -1.30 Total: 6.99 kcal Total: -72.79 2.91 -69.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605041.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.452 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds