Wall clock time and date at job start Mon Mar 30 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70960 * 125.61439 * 2 1 4 4 C 1.70799 * 91.04927 * 180.22178 * 3 2 1 5 5 N 1.28826 * 110.46809 * 359.80576 * 4 3 2 6 6 C 1.32844 * 115.87274 * 359.97438 * 5 4 3 7 7 C 1.47592 * 123.07960 * 180.02562 * 6 5 4 8 8 C 1.39741 * 121.05452 * 131.79827 * 7 6 5 9 9 C 1.37859 * 119.26830 * 180.25225 * 8 7 6 10 10 N 1.32336 * 121.52301 * 359.74720 * 9 8 7 11 11 C 1.31334 * 122.35959 * 359.97438 * 10 9 8 12 12 C 1.40791 * 120.49969 * 0.02562 * 11 10 9 13 13 C 1.40835 * 120.77363 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00024 * 150.26740 * 13 12 11 15 15 C 1.40010 * 120.00135 * 330.26891 * 13 12 11 16 16 N 1.30826 * 119.99904 * 334.67773 * 15 13 12 17 17 Si 1.86800 * 120.00192 * 154.67691 * 15 13 12 18 18 H 1.48491 * 109.47193 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47008 * 300.00005 * 17 15 13 20 20 H 1.48504 * 109.47041 * 59.99932 * 17 15 13 21 21 H 1.09000 * 109.46858 * 272.67873 * 1 2 3 22 22 H 1.08991 * 109.47168 * 32.68519 * 1 2 3 23 23 H 1.09001 * 109.47217 * 152.68871 * 1 2 3 24 24 H 1.07994 * 124.76622 * 179.82769 * 4 3 2 25 25 H 1.07997 * 120.36258 * 359.97438 * 8 7 6 26 26 H 1.07996 * 119.23733 * 179.71523 * 9 8 7 27 27 H 1.08003 * 119.75292 * 179.97438 * 11 10 9 28 28 H 0.97002 * 119.99815 * 354.31588 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5026 1.3898 0.0000 4 6 3.9091 0.4208 -0.0066 5 7 3.5953 -0.8286 -0.0043 6 6 2.2948 -1.0998 0.0029 7 6 1.7586 -2.4748 0.0070 8 6 0.7582 -2.8558 0.9052 9 6 0.2878 -4.1514 0.8804 10 7 0.7583 -5.0420 0.0220 11 6 1.6939 -4.7497 -0.8521 12 6 2.2402 -3.4533 -0.9075 13 6 3.2440 -3.1338 -1.8422 14 1 3.3259 -2.1267 -2.2236 15 6 4.1358 -4.1216 -2.2771 16 7 4.3877 -5.1560 -1.5168 17 14 4.9660 -3.9627 -3.9429 18 1 5.8569 -5.1297 -4.1653 19 1 3.9328 -3.9179 -5.0086 20 1 5.7687 -2.7138 -3.9788 21 1 -0.3633 0.0480 1.0266 22 1 -0.3633 0.8649 -0.5549 23 1 -0.3634 -0.9131 -0.4715 24 1 4.9195 0.8020 -0.0116 25 1 0.3612 -2.1443 1.6140 26 1 -0.4821 -4.4465 1.5779 27 1 2.0474 -5.5098 -1.5331 28 1 4.0221 -5.1987 -0.6193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259605066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:20 Heat of formation + Delta-G solvation = 54.894419 kcal Electronic energy + Delta-G solvation = -15159.350381 eV Core-core repulsion = 12687.137595 eV Total energy + Delta-G solvation = -2472.212786 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54802 -37.98487 -34.31832 -32.82656 -30.72997 -29.55627 -26.75797 -25.34518 -23.80026 -22.10730 -21.56841 -18.87090 -17.89303 -17.48175 -15.56888 -15.16141 -14.63878 -14.46536 -14.08036 -13.78336 -12.90412 -12.73311 -12.58373 -12.39801 -12.29862 -12.00982 -11.82920 -11.23678 -10.90216 -10.72060 -10.47378 -9.97919 -9.26700 -9.09755 -8.88032 -8.74309 -8.16348 -7.82595 -7.74762 -7.37583 -4.56466 1.19410 1.86882 2.22622 2.49206 2.59209 3.10419 3.20591 3.30703 3.62804 3.92479 4.50622 4.84029 5.37624 5.42920 5.54488 5.71026 5.79640 5.85930 6.13550 6.21442 6.27567 6.51235 6.64280 6.75565 7.00270 7.40254 7.47495 7.53544 7.84308 8.00224 8.35630 8.51286 8.59941 9.49315 9.87338 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.010594 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.753798 B = 2642.467062 C = 3777.998830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.270 4.270 3 S 0.111 5.889 4 C -0.007 4.007 5 N -0.422 5.422 6 C 0.154 3.846 7 C -0.134 4.134 8 C -0.097 4.097 9 C -0.066 4.066 10 N -0.460 5.460 11 C 0.008 3.992 12 C 0.067 3.933 13 C -0.463 4.463 14 H 0.079 0.921 15 C 0.037 3.963 16 N -0.777 5.777 17 Si 1.066 2.934 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.274 1.274 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.191 0.809 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 10.429 0.446 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.391 4.391 3 S 0.364 5.636 4 C -0.307 4.307 5 N -0.133 5.133 6 C 0.023 3.977 7 C -0.144 4.144 8 C -0.118 4.118 9 C -0.216 4.216 10 N -0.168 5.168 11 C -0.160 4.160 12 C 0.061 3.939 13 C -0.492 4.492 14 H 0.097 0.903 15 C -0.186 4.186 16 N -0.398 5.398 17 Si 0.888 3.112 18 H -0.195 1.195 19 H -0.198 1.198 20 H -0.200 1.200 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.098 0.902 24 H 0.207 0.793 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.154 0.846 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.855 9.456 -0.468 9.506 hybrid contribution -0.830 0.879 1.199 1.702 sum -1.685 10.334 0.731 10.496 Atomic orbital electron populations 1.20114 0.87346 1.02928 1.01836 1.25169 1.02053 0.95641 1.16241 1.82311 0.99882 1.11930 1.69460 1.28323 1.03237 0.91784 1.07311 1.66860 1.17664 1.16768 1.12019 1.18773 0.85964 0.93924 0.99011 1.17964 1.03795 0.91305 1.01298 1.21498 0.96186 0.96771 0.97387 1.21435 1.05948 0.90375 1.03868 1.66953 1.10076 1.36504 1.03225 1.22711 0.97047 0.96382 0.99891 1.18476 0.92930 0.91822 0.90659 1.20405 1.10886 0.99019 1.18849 0.90322 1.27170 0.95468 0.91131 1.04868 1.70462 1.32208 1.27442 1.09708 0.83622 0.76894 0.77485 0.73166 1.19521 1.19763 1.19964 0.91551 0.92096 0.90182 0.79267 0.88151 0.86064 0.84642 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 9.09 36.01 0.33 -0.64 15 2 C -0.27 -4.94 6.36 -35.36 -0.22 -5.16 15 3 S 0.11 1.64 22.95 -107.50 -2.47 -0.82 15 4 C -0.01 -0.12 12.19 51.50 0.63 0.50 15 5 N -0.42 -9.26 9.60 -12.36 -0.12 -9.38 15 6 C 0.15 3.41 5.57 -84.67 -0.47 2.94 15 7 C -0.13 -3.26 5.36 -103.95 -0.56 -3.82 15 8 C -0.10 -2.17 8.45 -39.16 -0.33 -2.50 15 9 C -0.07 -1.51 11.14 -17.47 -0.19 -1.70 15 10 N -0.46 -11.64 10.32 -12.69 -0.13 -11.77 15 11 C 0.01 0.20 9.22 -16.80 -0.15 0.04 15 12 C 0.07 1.77 5.22 -106.38 -0.56 1.21 15 13 C -0.46 -12.08 7.88 -37.94 -0.30 -12.38 15 14 H 0.08 2.08 7.25 -52.49 -0.38 1.70 15 15 C 0.04 0.93 4.92 -17.32 -0.09 0.84 15 16 N -0.78 -20.31 12.49 55.55 0.69 -19.61 15 17 Si 1.07 21.25 30.00 -169.99 -5.10 16.15 15 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 21 H 0.07 0.91 8.11 -51.93 -0.42 0.49 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.08 1.36 7.04 -51.93 -0.37 1.00 15 24 H 0.19 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.10 1.94 7.52 -52.49 -0.39 1.55 15 26 H 0.12 2.42 8.06 -52.49 -0.42 1.99 15 27 H 0.14 3.58 6.84 -52.48 -0.36 3.22 15 28 H 0.30 8.21 6.89 -40.82 -0.28 7.93 15 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -29.09 259.97 -7.39 -36.48 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -2.27 Total: 5.71 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.92 Total: -20.67 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.44 Total: -40.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.10 Total: 16.15 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.47 Total: -0.82 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.09 -7.39 -36.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.373 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds