Wall clock time and date at job start Mon Mar 30 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70960 * 125.61439 * 2 1 4 4 C 1.70799 * 91.04927 * 180.22178 * 3 2 1 5 5 N 1.28826 * 110.46809 * 359.80576 * 4 3 2 6 6 C 1.32844 * 115.87274 * 359.97438 * 5 4 3 7 7 C 1.47592 * 123.07960 * 180.02562 * 6 5 4 8 8 C 1.39741 * 121.05452 * 131.79827 * 7 6 5 9 9 C 1.37859 * 119.26830 * 180.25225 * 8 7 6 10 10 N 1.32336 * 121.52301 * 359.74720 * 9 8 7 11 11 C 1.31334 * 122.35959 * 359.97438 * 10 9 8 12 12 C 1.40791 * 120.49969 * 0.02562 * 11 10 9 13 13 C 1.40835 * 120.77363 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00024 * 150.26740 * 13 12 11 15 15 C 1.40010 * 120.00135 * 330.26891 * 13 12 11 16 16 N 1.30826 * 119.99904 * 334.67773 * 15 13 12 17 17 Si 1.86800 * 120.00192 * 154.67691 * 15 13 12 18 18 H 1.48491 * 109.47193 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47008 * 300.00005 * 17 15 13 20 20 H 1.48504 * 109.47041 * 59.99932 * 17 15 13 21 21 H 1.09000 * 109.46858 * 272.67873 * 1 2 3 22 22 H 1.08991 * 109.47168 * 32.68519 * 1 2 3 23 23 H 1.09001 * 109.47217 * 152.68871 * 1 2 3 24 24 H 1.07994 * 124.76622 * 179.82769 * 4 3 2 25 25 H 1.07997 * 120.36258 * 359.97438 * 8 7 6 26 26 H 1.07996 * 119.23733 * 179.71523 * 9 8 7 27 27 H 1.08003 * 119.75292 * 179.97438 * 11 10 9 28 28 H 0.97002 * 119.99815 * 354.31588 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5026 1.3898 0.0000 4 6 3.9091 0.4208 -0.0066 5 7 3.5953 -0.8286 -0.0043 6 6 2.2948 -1.0998 0.0029 7 6 1.7586 -2.4748 0.0070 8 6 0.7582 -2.8558 0.9052 9 6 0.2878 -4.1514 0.8804 10 7 0.7583 -5.0420 0.0220 11 6 1.6939 -4.7497 -0.8521 12 6 2.2402 -3.4533 -0.9075 13 6 3.2440 -3.1338 -1.8422 14 1 3.3259 -2.1267 -2.2236 15 6 4.1358 -4.1216 -2.2771 16 7 4.3877 -5.1560 -1.5168 17 14 4.9660 -3.9627 -3.9429 18 1 5.8569 -5.1297 -4.1653 19 1 3.9328 -3.9179 -5.0086 20 1 5.7687 -2.7138 -3.9788 21 1 -0.3633 0.0480 1.0266 22 1 -0.3633 0.8649 -0.5549 23 1 -0.3634 -0.9131 -0.4715 24 1 4.9195 0.8020 -0.0116 25 1 0.3612 -2.1443 1.6140 26 1 -0.4821 -4.4465 1.5779 27 1 2.0474 -5.5098 -1.5331 28 1 4.0221 -5.1987 -0.6193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259605066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:19 Heat of formation + Delta-G solvation = 36.666375 kcal Electronic energy + Delta-G solvation = -15160.140809 eV Core-core repulsion = 12687.137595 eV Total energy + Delta-G solvation = -2473.003213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13689 -39.73460 -36.18342 -34.35037 -32.39819 -31.40008 -28.24984 -27.19484 -25.16844 -23.83058 -23.43458 -20.52103 -19.66716 -18.87696 -17.22090 -16.93699 -16.39603 -15.98717 -15.63853 -15.33461 -14.61401 -14.32915 -14.13655 -13.88201 -13.77923 -13.64987 -13.40805 -12.91448 -12.64226 -12.15774 -12.02821 -11.72857 -11.07315 -10.58878 -10.39758 -10.16745 -10.06806 -9.69698 -9.39828 -9.20722 -6.50900 -0.19894 0.58345 0.62931 0.73408 0.92411 1.46457 1.60232 1.76050 2.06964 2.27708 2.64794 3.39740 3.63445 3.98902 4.05576 4.20882 4.32084 4.46506 4.60582 4.66918 4.82802 4.96594 5.00649 5.09303 5.15279 5.51190 5.60027 5.65431 5.91574 6.10515 6.56589 6.72045 7.00769 7.57529 7.91467 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.010594 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.753798 B = 2642.467062 C = 3777.998830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.273 4.273 3 S 0.226 5.774 4 C -0.022 4.022 5 N -0.479 5.479 6 C 0.105 3.895 7 C -0.130 4.130 8 C -0.099 4.099 9 C -0.061 4.061 10 N -0.478 5.478 11 C -0.021 4.021 12 C 0.042 3.958 13 C -0.489 4.489 14 H 0.067 0.933 15 C 0.004 3.996 16 N -0.802 5.802 17 Si 1.114 2.886 18 H -0.267 1.267 19 H -0.260 1.260 20 H -0.261 1.261 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.222 0.778 25 H 0.135 0.865 26 H 0.157 0.843 27 H 0.118 0.882 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 13.616 0.834 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.395 4.395 3 S 0.480 5.520 4 C -0.320 4.320 5 N -0.191 5.191 6 C -0.026 4.026 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.214 4.214 10 N -0.186 5.186 11 C -0.185 4.185 12 C 0.036 3.964 13 C -0.517 4.517 14 H 0.085 0.915 15 C -0.213 4.213 16 N -0.424 5.424 17 Si 0.930 3.070 18 H -0.191 1.191 19 H -0.184 1.184 20 H -0.185 1.185 21 H 0.108 0.892 22 H 0.108 0.892 23 H 0.077 0.923 24 H 0.238 0.762 25 H 0.153 0.847 26 H 0.174 0.826 27 H 0.136 0.864 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.625 12.651 -0.096 12.756 hybrid contribution -0.762 0.175 1.270 1.492 sum -2.387 12.826 1.175 13.099 Atomic orbital electron populations 1.20248 0.85445 1.03223 1.03559 1.25712 1.03904 0.96807 1.13072 1.81878 0.96124 1.07750 1.66266 1.28888 1.06001 0.91251 1.05836 1.66795 1.18193 1.19616 1.14522 1.18694 0.87010 0.93755 1.03149 1.18492 1.03010 0.92557 0.99961 1.21817 0.95608 0.97154 0.97372 1.22114 1.05724 0.90463 1.03084 1.66941 1.10243 1.37604 1.03850 1.22461 0.98496 0.96528 1.01060 1.18786 0.93562 0.92467 0.91557 1.20348 1.12103 0.98783 1.20483 0.91466 1.28516 0.95267 0.90223 1.07275 1.70584 1.33883 1.28833 1.09087 0.83056 0.76467 0.78004 0.69433 1.19128 1.18422 1.18496 0.89214 0.89220 0.92305 0.76190 0.84713 0.82615 0.86428 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 9.09 71.24 0.65 -1.14 15 2 C -0.27 -9.20 6.36 25.00 0.16 -9.05 15 3 S 0.23 5.70 22.95 -56.49 -1.30 4.40 15 4 C -0.02 -0.70 12.19 130.68 1.59 0.89 15 5 N -0.48 -20.82 9.60 -193.01 -1.85 -22.67 15 6 C 0.11 4.58 5.57 40.78 0.23 4.81 15 7 C -0.13 -6.40 5.36 -19.43 -0.10 -6.50 15 8 C -0.10 -4.30 8.45 22.54 0.19 -4.10 15 9 C -0.06 -2.74 11.14 84.53 0.94 -1.80 15 10 N -0.48 -24.80 10.32 -194.07 -2.00 -26.80 15 11 C -0.02 -1.16 9.22 85.39 0.79 -0.37 15 12 C 0.04 2.30 5.22 -21.00 -0.11 2.19 15 13 C -0.49 -26.67 7.88 23.34 0.18 -26.49 15 14 H 0.07 3.71 7.25 -2.91 -0.02 3.69 15 15 C 0.00 0.23 4.92 85.27 0.42 0.65 15 16 N -0.80 -44.38 12.49 21.84 0.27 -44.11 15 17 Si 1.11 43.83 30.00 68.60 2.06 45.89 15 18 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 20 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 21 H 0.09 2.05 8.11 -2.39 -0.02 2.03 15 22 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.06 1.87 7.04 -2.39 -0.02 1.86 15 24 H 0.22 5.12 8.06 -2.91 -0.02 5.10 15 25 H 0.14 4.83 7.52 -2.91 -0.02 4.81 15 26 H 0.16 5.82 8.06 -2.91 -0.02 5.80 15 27 H 0.12 6.73 6.84 -2.91 -0.02 6.71 15 28 H 0.28 16.45 6.89 -92.71 -0.64 15.81 15 Total: -1.00 -67.18 259.97 3.43 -63.74 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.32 Total: 20.46 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 4.93 Total: -40.92 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -3.58 Total: -93.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.06 Total: 45.89 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.30 Total: 4.40 kcal Total: -67.18 3.43 -63.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.411 kcal (2) G-P(sol) polarization free energy of solvation -67.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds