Wall clock time and date at job start Mon Mar 30 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31915 * 119.02341 * 2 1 4 4 C 1.32523 * 121.19024 * 179.97438 * 3 2 1 5 5 C 1.38195 * 119.23440 * 359.97438 * 4 3 2 6 6 C 1.40386 * 118.23201 * 0.02562 * 5 4 3 7 7 C 1.46932 * 120.61133 * 179.72577 * 6 5 4 8 8 S 1.75665 * 125.23131 * 359.69202 * 7 6 5 9 9 C 1.75467 * 92.08987 * 179.91664 * 8 7 6 10 10 C 1.32510 * 111.38282 * 0.35589 * 9 8 7 11 11 C 1.39394 * 125.23185 * 179.97438 * 7 6 5 12 12 C 1.40530 * 123.72567 * 0.02562 * 11 7 6 13 13 H 1.07995 * 120.00030 * 23.91581 * 12 11 7 14 14 C 1.40058 * 120.00008 * 203.92262 * 12 11 7 15 15 N 1.30822 * 119.99790 * 9.75540 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 189.76062 * 14 12 11 17 17 H 1.48501 * 109.46879 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47264 * 119.99645 * 16 14 12 19 19 H 1.48500 * 109.47009 * 239.99968 * 16 14 12 20 20 N 1.31528 * 119.01939 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46972 * 90.00082 * 1 2 3 22 22 H 1.09002 * 109.47088 * 210.00583 * 1 2 3 23 23 H 1.08998 * 109.46884 * 330.00067 * 1 2 3 24 24 H 1.07994 * 120.38855 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.87939 * 179.97438 * 5 4 3 26 26 H 1.08004 * 124.30866 * 180.08851 * 9 8 7 27 27 H 1.08005 * 122.77978 * 179.73068 * 10 9 8 28 28 H 0.97006 * 119.99716 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1471 1.1535 0.0000 4 6 3.4714 1.2036 0.0005 5 6 4.1914 0.0241 0.0016 6 6 3.4817 -1.1872 0.0015 7 6 4.1945 -2.4720 -0.0034 8 16 5.9408 -2.6620 -0.0173 9 6 5.8148 -4.4122 -0.0127 10 6 4.5494 -4.8054 -0.0091 11 6 3.5890 -3.7276 -0.0034 12 6 2.1973 -3.9227 0.0010 13 1 1.5426 -3.1504 -0.3748 14 6 1.6594 -5.1187 0.4927 15 7 2.4271 -5.9719 1.1204 16 14 -0.1543 -5.4955 0.2522 17 1 -0.7989 -4.3776 -0.4827 18 1 -0.2999 -6.7505 -0.5280 19 1 -0.8061 -5.6576 1.5767 20 7 2.1451 -1.1502 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 3.9820 2.1552 0.0009 25 1 5.2714 0.0339 0.0016 26 1 6.6609 -5.0834 -0.0168 27 1 4.2605 -5.8461 -0.0102 28 1 2.0546 -6.8004 1.4607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259621128.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:54 Heat of formation + Delta-G solvation = 46.046425 kcal Electronic energy + Delta-G solvation = -14919.837862 eV Core-core repulsion = 12447.241398 eV Total energy + Delta-G solvation = -2472.596464 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.38208 -38.21047 -35.04847 -34.33605 -33.97592 -30.54908 -29.27914 -27.89925 -24.83223 -23.63222 -22.63993 -20.74223 -18.97281 -18.11315 -17.36726 -16.84187 -16.12906 -15.84410 -15.83149 -15.31712 -14.27640 -14.08533 -13.83335 -13.51697 -13.45651 -13.16651 -13.08501 -12.84558 -12.73646 -12.16606 -12.01635 -11.50459 -11.44022 -11.33815 -10.99031 -10.35994 -9.70530 -9.12163 -8.94177 -8.80948 -6.37329 -0.14033 0.39700 1.09871 1.31870 1.35170 1.38480 1.54608 1.76829 2.08958 2.17445 3.07876 3.37633 3.39149 3.63721 3.96363 4.36667 4.43269 4.64149 4.65541 4.77805 4.78470 4.97561 5.09903 5.16082 5.37802 5.41029 5.61314 5.83824 5.92337 6.46287 6.48215 6.63096 6.78592 7.59290 8.03817 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.011735 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.690119 B = 2385.482284 C = 3994.586543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.301 3.699 3 N -0.584 5.584 4 C 0.150 3.850 5 C -0.292 4.292 6 C 0.275 3.725 7 C -0.391 4.391 8 S 0.002 5.998 9 C -0.198 4.198 10 C -0.126 4.126 11 C 0.095 3.905 12 C -0.379 4.379 13 H 0.111 0.889 14 C 0.029 3.971 15 N -0.790 5.790 16 Si 0.990 3.010 17 H -0.255 1.255 18 H -0.255 1.255 19 H -0.262 1.262 20 N -0.556 5.556 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.192 0.808 25 H 0.137 0.863 26 H 0.175 0.825 27 H 0.141 0.859 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 2.465 -1.264 3.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 N -0.303 5.303 4 C -0.011 4.011 5 C -0.315 4.315 6 C 0.138 3.862 7 C -0.509 4.509 8 S 0.257 5.743 9 C -0.332 4.332 10 C -0.158 4.158 11 C 0.083 3.917 12 C -0.410 4.410 13 H 0.129 0.871 14 C -0.192 4.192 15 N -0.413 5.413 16 Si 0.809 3.191 17 H -0.178 1.178 18 H -0.179 1.179 19 H -0.186 1.186 20 N -0.275 5.275 21 H 0.110 0.890 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.209 0.791 25 H 0.154 0.846 26 H 0.192 0.808 27 H 0.158 0.842 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.000 3.250 -1.144 3.587 hybrid contribution -0.414 -1.385 0.126 1.451 sum -1.414 1.865 -1.018 2.552 Atomic orbital electron populations 1.20540 0.84511 1.04055 1.04185 1.23826 0.99339 0.83823 0.89798 1.68229 1.10547 1.29949 1.21614 1.23289 0.89570 0.98598 0.89656 1.22648 1.01873 0.94026 1.12987 1.19331 0.88624 0.91698 0.86586 1.21860 0.93904 0.93656 1.41464 1.82552 1.04731 1.02550 1.84464 1.25399 1.00691 0.98004 1.09066 1.21640 0.91957 1.00626 1.01603 1.18553 0.94749 0.89480 0.88915 1.20414 0.92584 1.00354 1.27677 0.87123 1.27222 1.06191 0.94021 0.91740 1.69767 1.40167 1.08692 1.22676 0.85008 0.74819 0.79630 0.79652 1.17773 1.17915 1.18649 1.68626 1.09339 1.29622 1.19925 0.89003 0.90323 0.88534 0.79116 0.84557 0.80801 0.84152 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.37 10.31 71.24 0.73 -1.64 15 2 C 0.30 12.61 7.64 138.80 1.06 13.67 15 3 N -0.58 -23.18 10.32 -188.13 -1.94 -25.13 15 4 C 0.15 5.50 11.29 84.58 0.95 6.45 15 5 C -0.29 -12.20 9.72 22.78 0.22 -11.98 15 6 C 0.28 13.57 6.77 41.66 0.28 13.85 15 7 C -0.39 -19.93 6.48 24.83 0.16 -19.77 15 8 S 0.00 0.07 22.22 -56.49 -1.26 -1.19 15 9 C -0.20 -8.30 11.05 66.68 0.74 -7.56 15 10 C -0.13 -6.04 9.03 22.69 0.20 -5.83 15 11 C 0.09 4.98 5.67 -20.88 -0.12 4.86 15 12 C -0.38 -19.61 8.47 23.27 0.20 -19.42 15 13 H 0.11 5.86 5.81 -2.91 -0.02 5.84 15 14 C 0.03 1.33 5.39 85.28 0.46 1.79 15 15 N -0.79 -36.61 10.84 21.85 0.24 -36.38 15 16 Si 0.99 35.10 29.57 68.60 2.03 37.13 15 17 H -0.25 -9.09 7.11 99.48 0.71 -8.39 15 18 H -0.26 -8.41 7.11 99.48 0.71 -7.70 15 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 20 N -0.56 -27.06 7.45 -177.42 -1.32 -28.38 15 21 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 22 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.19 5.12 8.06 -2.91 -0.02 5.10 15 25 H 0.14 5.23 7.39 -2.91 -0.02 5.20 15 26 H 0.17 5.88 8.06 -2.91 -0.02 5.86 15 27 H 0.14 6.67 6.43 -2.91 -0.02 6.66 15 28 H 0.30 12.26 8.30 -92.70 -0.77 11.49 15 Total: -1.00 -59.88 262.02 3.83 -56.05 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 1.19 Total: 23.47 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 4.90 Total: -25.58 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -3.03 Total: -89.89 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.26 Total: -1.19 kcal Total: -59.88 3.83 -56.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259621128.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.095 kcal (2) G-P(sol) polarization free energy of solvation -59.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds