Wall clock time and date at job start Mon Mar 30 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99648 * 2 1 4 4 H 1.48509 * 109.46761 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47204 * 299.99942 * 3 2 1 6 6 H 1.48493 * 109.47285 * 60.00543 * 3 2 1 7 7 C 1.37876 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.38679 * 120.69943 * 90.00355 * 10 9 7 12 12 N 1.32196 * 119.21633 * 179.69538 * 11 10 9 13 13 C 1.32726 * 120.72199 * 0.28159 * 12 11 10 14 14 C 1.48039 * 119.23625 * 179.97438 * 13 12 11 15 15 C 1.39666 * 122.86802 * 179.73011 * 14 13 12 16 16 C 1.33120 * 113.74489 * 179.77111 * 15 14 13 17 17 S 1.75729 * 109.77324 * 0.47616 * 16 15 14 18 18 C 1.34564 * 122.87068 * 0.02712 * 14 13 12 19 19 N 1.32714 * 121.52235 * 0.02562 * 13 12 11 20 20 C 1.32190 * 120.72795 * 359.97438 * 19 13 12 21 21 H 0.96998 * 120.00227 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46922 * 60.00116 * 9 7 2 23 23 H 1.08997 * 109.47093 * 300.00730 * 9 7 2 24 24 H 1.08002 * 120.39632 * 359.97438 * 11 10 9 25 25 H 1.08001 * 123.12318 * 359.97438 * 15 14 13 26 26 H 1.07994 * 125.10883 * 180.20188 * 16 15 14 27 27 H 1.07996 * 124.74199 * 359.96165 * 18 14 13 28 28 H 1.08001 * 120.39558 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6905 -4.1827 1.1919 12 7 3.5447 -5.1911 1.1577 13 6 3.9657 -5.6841 -0.0004 14 6 4.9229 -6.8134 -0.0004 15 6 5.4106 -7.3937 -1.1734 16 6 6.2646 -8.3928 -0.9623 17 16 6.4713 -8.6433 0.7647 18 6 5.3929 -7.3723 1.1299 19 7 3.5491 -5.1874 -1.1585 20 6 2.6951 -4.1790 -1.1929 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.3516 -3.7857 2.1374 25 1 5.1242 -7.0605 -2.1600 26 1 6.7532 -8.9663 -1.7361 27 1 5.1254 -7.0598 2.1284 28 1 2.3594 -3.7792 -2.1383 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:31 Heat of formation + Delta-G solvation = 68.127280 kcal Electronic energy + Delta-G solvation = -14242.029779 eV Core-core repulsion = 11770.390813 eV Total energy + Delta-G solvation = -2471.638966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47546 -37.72952 -33.98822 -33.15985 -31.95336 -29.67763 -27.51750 -24.97247 -23.93427 -22.90291 -21.28775 -19.28380 -17.95110 -16.94602 -16.49933 -16.08649 -14.84093 -14.47631 -14.45074 -13.35205 -13.09101 -12.95397 -12.88236 -12.50266 -12.34684 -12.31820 -11.52665 -11.28600 -10.92605 -10.81886 -10.53652 -10.25291 -9.87432 -9.62665 -9.07405 -8.77361 -8.74827 -8.50275 -7.84551 -6.18664 -4.24354 0.78914 1.58180 1.63560 1.66985 1.97094 2.89952 3.21836 3.30220 3.34964 4.28374 4.31253 4.50473 4.65636 5.08965 5.16482 5.33734 5.40084 5.60861 5.66242 5.73714 5.96420 6.23329 6.29715 6.42213 6.62463 6.98237 7.32790 7.43350 7.56059 7.75912 8.10731 8.58253 8.80242 9.41170 10.90819 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.051113 B = 0.004327 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.670863 B = 6469.274084 C = 6500.760682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.056 3.944 10 C -0.130 4.130 11 C 0.136 3.864 12 N -0.514 5.514 13 C 0.329 3.671 14 C -0.047 4.047 15 C -0.094 4.094 16 C -0.241 4.241 17 S 0.151 5.849 18 C -0.204 4.204 19 N -0.511 5.511 20 C 0.136 3.864 21 H 0.264 0.736 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.166 0.834 25 H 0.152 0.848 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.408 -14.424 0.086 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.134 4.134 11 C -0.030 4.030 12 N -0.227 5.227 13 C 0.062 3.938 14 C -0.062 4.062 15 C -0.124 4.124 16 C -0.376 4.376 17 S 0.415 5.585 18 C -0.343 4.343 19 N -0.224 5.224 20 C -0.030 4.030 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.183 0.817 25 H 0.170 0.830 26 H 0.183 0.817 27 H 0.191 0.809 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.740 -16.066 0.946 19.348 hybrid contribution -1.157 2.898 -0.832 3.230 sum 9.582 -13.167 0.115 16.286 Atomic orbital electron populations 1.69949 1.06033 1.27056 1.49761 1.24993 0.94911 0.99357 0.94784 0.86444 0.80094 0.83211 0.77787 1.19675 1.20774 1.20780 1.21022 0.92993 0.89611 1.52078 0.92488 1.18277 0.92047 0.88678 0.99182 1.22501 0.98891 0.97883 0.94111 1.23089 0.90905 0.89943 0.99086 1.68228 1.12516 1.12208 1.29745 1.20509 0.94648 0.94195 0.84449 1.17143 0.99728 0.96823 0.92524 1.20268 0.96855 0.95543 0.99762 1.25535 1.07470 1.05494 0.99054 1.82959 1.42839 1.31860 1.00817 1.25176 1.03613 1.01890 1.03648 1.68242 1.12475 1.11997 1.29686 1.23105 0.90851 0.89956 0.99090 0.92640 0.94568 0.94599 0.81662 0.82998 0.81702 0.80903 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 13.29 55.43 0.74 -24.35 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -13.77 9.09 -34.44 -0.31 -14.09 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.06 1.34 5.15 -29.03 -0.15 1.19 15 10 C -0.13 -2.69 5.11 -104.30 -0.53 -3.22 15 11 C 0.14 2.64 11.00 -17.23 -0.19 2.45 15 12 N -0.51 -9.85 9.82 -11.17 -0.11 -9.96 15 13 C 0.33 6.20 7.58 -156.85 -1.19 5.01 15 14 C -0.05 -0.74 5.80 -106.64 -0.62 -1.36 15 15 C -0.09 -1.28 9.79 -40.83 -0.40 -1.68 15 16 C -0.24 -2.61 11.20 28.95 0.32 -2.29 15 17 S 0.15 1.57 23.09 -107.50 -2.48 -0.91 15 18 C -0.20 -2.78 10.42 29.43 0.31 -2.48 15 19 N -0.51 -9.79 9.84 -11.17 -0.11 -9.90 15 20 C 0.14 2.65 11.00 -17.23 -0.19 2.46 15 21 H 0.26 7.02 8.31 -40.82 -0.34 6.69 15 22 H 0.04 0.89 8.10 -51.93 -0.42 0.47 15 23 H 0.04 0.89 8.10 -51.93 -0.42 0.47 15 24 H 0.17 2.91 8.06 -52.49 -0.42 2.49 15 25 H 0.15 2.02 7.90 -52.49 -0.41 1.61 15 26 H 0.17 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.17 2.30 7.90 -52.49 -0.41 1.88 15 28 H 0.17 2.91 8.06 -52.49 -0.42 2.48 15 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -29.17 270.71 -8.43 -37.60 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -2.48 Total: 0.04 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.05 Total: -12.43 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.52 Total: -44.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.17 -8.43 -37.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.730 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds