Wall clock time and date at job start Mon Mar 30 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99648 * 2 1 4 4 H 1.48509 * 109.46761 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47204 * 299.99942 * 3 2 1 6 6 H 1.48493 * 109.47285 * 60.00543 * 3 2 1 7 7 C 1.37876 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.38679 * 120.69943 * 90.00355 * 10 9 7 12 12 N 1.32196 * 119.21633 * 179.69538 * 11 10 9 13 13 C 1.32726 * 120.72199 * 0.28159 * 12 11 10 14 14 C 1.48039 * 119.23625 * 179.97438 * 13 12 11 15 15 C 1.39666 * 122.86802 * 179.73011 * 14 13 12 16 16 C 1.33120 * 113.74489 * 179.77111 * 15 14 13 17 17 S 1.75729 * 109.77324 * 0.47616 * 16 15 14 18 18 C 1.34564 * 122.87068 * 0.02712 * 14 13 12 19 19 N 1.32714 * 121.52235 * 0.02562 * 13 12 11 20 20 C 1.32190 * 120.72795 * 359.97438 * 19 13 12 21 21 H 0.96998 * 120.00227 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46922 * 60.00116 * 9 7 2 23 23 H 1.08997 * 109.47093 * 300.00730 * 9 7 2 24 24 H 1.08002 * 120.39632 * 359.97438 * 11 10 9 25 25 H 1.08001 * 123.12318 * 359.97438 * 15 14 13 26 26 H 1.07994 * 125.10883 * 180.20188 * 16 15 14 27 27 H 1.07996 * 124.74199 * 359.96165 * 18 14 13 28 28 H 1.08001 * 120.39558 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6905 -4.1827 1.1919 12 7 3.5447 -5.1911 1.1577 13 6 3.9657 -5.6841 -0.0004 14 6 4.9229 -6.8134 -0.0004 15 6 5.4106 -7.3937 -1.1734 16 6 6.2646 -8.3928 -0.9623 17 16 6.4713 -8.6433 0.7647 18 6 5.3929 -7.3723 1.1299 19 7 3.5491 -5.1874 -1.1585 20 6 2.6951 -4.1790 -1.1929 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.3516 -3.7857 2.1374 25 1 5.1242 -7.0605 -2.1600 26 1 6.7532 -8.9663 -1.7361 27 1 5.1254 -7.0598 2.1284 28 1 2.3594 -3.7792 -2.1383 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:31 Heat of formation + Delta-G solvation = 52.013581 kcal Electronic energy + Delta-G solvation = -14242.728521 eV Core-core repulsion = 11770.390813 eV Total energy + Delta-G solvation = -2472.337708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95087 -38.81433 -35.83218 -34.66299 -33.73255 -30.87715 -29.14316 -26.51567 -25.48137 -24.33425 -22.84515 -20.44098 -19.02235 -18.57412 -18.35901 -17.28594 -16.70658 -15.94053 -15.68298 -15.06942 -14.45419 -14.43330 -14.07970 -13.91030 -13.61471 -13.46839 -13.28948 -13.09689 -12.66094 -12.39502 -11.85921 -11.76839 -11.72054 -11.39723 -10.67028 -10.48538 -10.17475 -9.76271 -9.05054 -8.24100 -6.37177 -0.44499 0.13464 0.36918 0.72278 1.02015 1.38714 1.40877 1.52391 1.73496 2.38153 2.96324 2.99890 3.07968 3.21918 3.81656 4.11957 4.14728 4.16811 4.43845 4.58351 4.63603 4.90266 5.08449 5.28548 5.31893 5.45113 5.50559 5.56287 5.68361 6.02589 6.10009 6.73839 7.08409 7.32007 8.84970 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.051113 B = 0.004327 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.670863 B = 6469.274084 C = 6500.760682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.050 0.950 9 C 0.069 3.931 10 C -0.154 4.154 11 C 0.138 3.862 12 N -0.521 5.521 13 C 0.329 3.671 14 C -0.084 4.084 15 C -0.119 4.119 16 C -0.228 4.228 17 S 0.233 5.767 18 C -0.217 4.217 19 N -0.517 5.517 20 C 0.139 3.861 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.179 0.821 25 H 0.147 0.853 26 H 0.199 0.801 27 H 0.171 0.829 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 -15.787 0.152 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.031 3.969 10 C -0.158 4.158 11 C -0.028 4.028 12 N -0.234 5.234 13 C 0.063 3.937 14 C -0.100 4.100 15 C -0.149 4.149 16 C -0.363 4.363 17 S 0.499 5.501 18 C -0.356 4.356 19 N -0.231 5.231 20 C -0.027 4.027 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.196 0.804 25 H 0.165 0.835 26 H 0.216 0.784 27 H 0.189 0.811 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.875 -17.445 1.012 21.705 hybrid contribution -1.697 3.117 -0.809 3.640 sum 11.178 -14.328 0.204 18.173 Atomic orbital electron populations 1.70046 1.07389 1.28053 1.50702 1.25790 0.95701 1.02710 0.94433 0.85451 0.78731 0.79158 0.78027 1.19488 1.20134 1.20140 1.21294 0.92830 0.91073 1.51733 0.93190 1.17972 0.92146 0.89243 0.97555 1.22186 0.99993 0.98291 0.95329 1.23291 0.90472 0.89747 0.99243 1.68342 1.12831 1.12282 1.29992 1.21267 0.94065 0.94281 0.84126 1.17314 1.01018 0.97346 0.94333 1.20230 0.98605 0.97088 0.98939 1.25981 1.05611 1.04042 1.00657 1.82729 1.39555 1.28422 0.99441 1.25407 1.04128 1.02977 1.03138 1.68361 1.12748 1.12041 1.29941 1.23312 0.90412 0.89762 0.99249 0.92373 0.96145 0.96180 0.80402 0.83537 0.78370 0.81116 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.78 13.29 21.45 0.28 -52.50 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.96 42.89 29.54 68.60 2.03 44.92 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 15 7 C -0.53 -28.72 9.09 25.60 0.23 -28.49 15 8 H 0.05 2.72 7.74 -2.91 -0.02 2.69 15 9 C 0.07 3.41 5.15 29.10 0.15 3.56 15 10 C -0.15 -6.54 5.11 -19.65 -0.10 -6.64 15 11 C 0.14 5.47 11.00 84.74 0.93 6.40 15 12 N -0.52 -20.04 9.82 -189.26 -1.86 -21.90 15 13 C 0.33 12.39 7.58 137.38 1.04 13.43 15 14 C -0.08 -2.59 5.80 -21.17 -0.12 -2.71 15 15 C -0.12 -3.05 9.79 21.46 0.21 -2.84 15 16 C -0.23 -4.15 11.20 66.67 0.75 -3.40 15 17 S 0.23 3.99 23.09 -56.49 -1.30 2.69 15 18 C -0.22 -5.53 10.42 66.98 0.70 -4.83 15 19 N -0.52 -19.95 9.84 -189.27 -1.86 -21.81 15 20 C 0.14 5.49 11.00 84.74 0.93 6.42 15 21 H 0.27 14.36 8.31 -92.71 -0.77 13.59 15 22 H 0.02 1.05 8.10 -2.39 -0.02 1.03 15 23 H 0.02 1.03 8.10 -2.39 -0.02 1.01 15 24 H 0.18 6.37 8.06 -2.91 -0.02 6.34 15 25 H 0.15 3.80 7.90 -2.91 -0.02 3.78 15 26 H 0.20 2.21 8.06 -2.91 -0.02 2.18 15 27 H 0.17 4.33 7.90 -2.91 -0.02 4.31 15 28 H 0.18 6.38 8.06 -2.91 -0.02 6.36 15 Total: -1.00 -62.59 270.71 3.64 -58.95 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.17 Total: 7.59 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 5.18 Total: -17.94 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.44 Total: -96.21 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.30 Total: 2.69 kcal Total: -62.59 3.64 -58.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.959 kcal (2) G-P(sol) polarization free energy of solvation -62.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds