Wall clock time and date at job start Mon Mar 30 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34240 * 122.08079 * 2 1 4 4 S 1.76260 * 108.18823 * 179.97438 * 3 2 1 5 5 C 1.76168 * 89.83857 * 0.02562 * 4 3 2 6 6 C 1.47121 * 125.46791 * 179.97438 * 5 4 3 7 7 C 1.40014 * 121.32995 * 173.51178 * 6 5 4 8 8 C 1.37782 * 119.16666 * 179.77224 * 7 6 5 9 9 N 1.32159 * 122.16118 * 0.52985 * 8 7 6 10 10 C 1.31207 * 123.04793 * 359.73035 * 9 8 7 11 11 C 1.40991 * 120.39298 * 359.97438 * 10 9 8 12 12 C 1.40711 * 121.05909 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00157 * 143.63271 * 12 11 10 14 14 C 1.40105 * 119.99738 * 323.62460 * 12 11 10 15 15 N 1.30756 * 119.99705 * 351.53351 * 14 12 11 16 16 Si 1.86797 * 119.99824 * 171.52837 * 14 12 11 17 17 H 1.48506 * 109.47272 * 90.00231 * 16 14 12 18 18 H 1.48503 * 109.47085 * 210.00044 * 16 14 12 19 19 H 1.48504 * 109.47511 * 330.00159 * 16 14 12 20 20 N 1.30586 * 109.06758 * 359.97438 * 5 4 3 21 21 H 1.09007 * 109.46697 * 90.00259 * 1 2 3 22 22 H 1.08994 * 109.47375 * 210.00063 * 1 2 3 23 23 H 1.08998 * 109.47529 * 330.00820 * 1 2 3 24 24 H 1.07998 * 125.91156 * 0.23756 * 3 2 1 25 25 H 1.08001 * 120.41318 * 0.02581 * 7 6 5 26 26 H 1.08002 * 118.92071 * 180.23027 * 8 7 6 27 27 H 1.07994 * 119.80499 * 179.97438 * 10 9 8 28 28 H 0.97007 * 119.99475 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2200 1.1374 0.0000 4 16 3.9310 0.7142 0.0007 5 6 3.5032 -0.9947 0.0002 6 6 4.4583 -2.1138 -0.0001 7 6 4.0270 -3.4391 0.1346 8 6 4.9596 -4.4531 0.1237 9 7 6.2541 -4.2171 0.0003 10 6 6.7524 -3.0099 -0.1261 11 6 5.9027 -1.8849 -0.1360 12 6 6.4220 -0.5841 -0.2712 13 1 5.8786 0.1582 -0.8370 14 6 7.6440 -0.2519 0.3283 15 7 8.2202 -1.0925 1.1474 16 14 8.4498 1.3920 -0.0427 17 1 7.9785 2.4061 0.9345 18 1 9.9249 1.2544 0.0594 19 1 8.0867 1.8225 -1.4168 20 7 2.2024 -1.1089 0.0001 21 1 -0.3633 0.0000 -1.0278 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.8153 2.1387 0.0036 25 1 2.9760 -3.6638 0.2416 26 1 4.6222 -5.4742 0.2242 27 1 7.8198 -2.8773 -0.2231 28 1 9.0665 -0.8626 1.5621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259659848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:41 Heat of formation + Delta-G solvation = 56.437636 kcal Electronic energy + Delta-G solvation = -14836.836143 eV Core-core repulsion = 12364.690276 eV Total energy + Delta-G solvation = -2472.145867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91277 -38.05845 -34.33637 -32.47713 -30.25914 -29.87086 -26.94391 -26.08705 -24.27563 -21.77283 -20.78035 -18.44493 -17.74139 -17.03093 -15.69163 -15.46406 -14.49703 -14.18790 -14.05622 -13.71299 -12.87295 -12.71272 -12.58489 -12.29698 -12.00615 -11.90661 -11.70195 -11.56524 -11.38202 -10.83735 -10.33023 -10.01629 -9.65715 -9.17637 -8.84978 -8.43416 -8.18907 -7.72309 -7.39876 -7.19510 -4.83953 1.17260 2.26903 2.45987 2.70407 2.71430 2.88307 2.92605 2.97610 3.64516 3.77643 4.35242 4.80708 5.35514 5.61324 5.68431 5.86458 5.87718 5.92535 6.08978 6.09656 6.38819 6.53115 6.59204 6.71018 6.93404 7.02971 7.34501 7.45608 7.70120 7.91954 8.27406 8.34622 8.60623 9.49303 9.73737 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.010661 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.376229 B = 2625.882625 C = 3979.620002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.073 3.927 3 C -0.341 4.341 4 S 0.114 5.886 5 C 0.175 3.825 6 C -0.142 4.142 7 C -0.081 4.081 8 C -0.040 4.040 9 N -0.472 5.472 10 C 0.072 3.928 11 C 0.089 3.911 12 C -0.432 4.432 13 H 0.097 0.903 14 C 0.080 3.920 15 N -0.771 5.771 16 Si 0.912 3.088 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.253 1.253 20 N -0.512 5.512 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.157 0.843 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.150 0.850 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 4.962 -1.215 6.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.480 4.480 4 S 0.376 5.624 5 C -0.094 4.094 6 C -0.154 4.154 7 C -0.105 4.105 8 C -0.189 4.189 9 N -0.181 5.181 10 C -0.097 4.097 11 C 0.081 3.919 12 C -0.466 4.466 13 H 0.114 0.886 14 C -0.143 4.143 15 N -0.394 5.394 16 Si 0.734 3.266 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.176 1.176 20 N -0.228 5.228 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.174 0.826 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.167 0.833 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.045 4.345 -1.028 5.404 hybrid contribution -1.180 1.567 0.051 1.962 sum -4.225 5.912 -0.977 7.332 Atomic orbital electron populations 1.20295 0.88882 1.02285 1.01979 1.19946 0.97318 0.87158 1.01750 1.27168 0.99952 1.02432 1.18492 1.85590 1.02658 1.04954 1.69206 1.25448 0.91114 0.94506 0.98342 1.19090 0.91148 0.89642 1.15499 1.21640 0.99456 0.92111 0.97313 1.21583 0.88581 0.97600 1.11165 1.66812 1.15481 1.26194 1.09624 1.22879 0.99582 0.85804 1.01393 1.19585 0.89163 0.94999 0.88119 1.19557 1.03386 0.96179 1.27433 0.88560 1.25992 0.95780 0.99861 0.92669 1.69685 1.15563 1.35819 1.18295 0.86184 0.78768 0.80647 0.80955 1.18557 1.19341 1.17649 1.66390 1.04382 1.30295 1.21721 0.91531 0.91312 0.91655 0.82574 0.86778 0.85750 0.83264 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.28 36.01 0.37 -0.70 15 2 C 0.07 1.38 6.69 -84.40 -0.56 0.82 15 3 C -0.34 -6.20 11.11 29.32 0.33 -5.88 15 4 S 0.11 2.34 19.21 -107.50 -2.06 0.27 15 5 C 0.18 4.04 7.32 -14.48 -0.11 3.93 15 6 C -0.14 -3.45 6.11 -102.13 -0.62 -4.07 15 7 C -0.08 -1.86 9.77 -39.08 -0.38 -2.24 15 8 C -0.04 -0.89 11.10 -17.58 -0.20 -1.09 15 9 N -0.47 -11.52 10.26 -12.72 -0.13 -11.65 15 10 C 0.07 1.77 9.85 -16.78 -0.17 1.61 15 11 C 0.09 2.21 5.63 -104.43 -0.59 1.62 15 12 C -0.43 -10.19 7.35 -37.95 -0.28 -10.47 15 13 H 0.10 2.20 5.20 -36.35 -0.19 2.01 15 14 C 0.08 1.77 5.27 -17.31 -0.09 1.68 15 15 N -0.77 -17.73 11.31 55.56 0.63 -17.11 15 16 Si 0.91 16.63 29.57 -169.99 -5.03 11.60 15 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 18 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 19 H -0.25 -4.56 7.11 56.52 0.40 -4.16 15 20 N -0.51 -11.23 10.24 -7.67 -0.08 -11.30 15 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.06 0.78 8.11 -51.93 -0.42 0.36 15 24 H 0.16 2.34 8.06 -52.49 -0.42 1.92 15 25 H 0.11 2.41 7.94 -52.49 -0.42 2.00 15 26 H 0.12 2.42 8.06 -52.49 -0.42 2.00 15 27 H 0.15 3.67 6.79 -52.49 -0.36 3.31 15 28 H 0.29 6.06 8.29 -40.82 -0.34 5.72 15 LS Contribution 261.12 15.07 3.93 3.93 Total: -1.00 -26.32 261.12 -7.24 -33.56 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.21 Total: 5.47 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.30 Total: -14.79 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.42 Total: -40.06 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.06 Total: 0.27 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.32 -7.24 -33.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.998 kcal (2) G-P(sol) polarization free energy of solvation -26.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds