Wall clock time and date at job start Mon Mar 30 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34240 * 122.08079 * 2 1 4 4 S 1.76260 * 108.18823 * 179.97438 * 3 2 1 5 5 C 1.76168 * 89.83857 * 0.02562 * 4 3 2 6 6 C 1.47121 * 125.46791 * 179.97438 * 5 4 3 7 7 C 1.40014 * 121.32995 * 173.51178 * 6 5 4 8 8 C 1.37782 * 119.16666 * 179.77224 * 7 6 5 9 9 N 1.32159 * 122.16118 * 0.52985 * 8 7 6 10 10 C 1.31207 * 123.04793 * 359.73035 * 9 8 7 11 11 C 1.40991 * 120.39298 * 359.97438 * 10 9 8 12 12 C 1.40711 * 121.05909 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00157 * 143.63271 * 12 11 10 14 14 C 1.40105 * 119.99738 * 323.62460 * 12 11 10 15 15 N 1.30756 * 119.99705 * 351.53351 * 14 12 11 16 16 Si 1.86797 * 119.99824 * 171.52837 * 14 12 11 17 17 H 1.48506 * 109.47272 * 90.00231 * 16 14 12 18 18 H 1.48503 * 109.47085 * 210.00044 * 16 14 12 19 19 H 1.48504 * 109.47511 * 330.00159 * 16 14 12 20 20 N 1.30586 * 109.06758 * 359.97438 * 5 4 3 21 21 H 1.09007 * 109.46697 * 90.00259 * 1 2 3 22 22 H 1.08994 * 109.47375 * 210.00063 * 1 2 3 23 23 H 1.08998 * 109.47529 * 330.00820 * 1 2 3 24 24 H 1.07998 * 125.91156 * 0.23756 * 3 2 1 25 25 H 1.08001 * 120.41318 * 0.02581 * 7 6 5 26 26 H 1.08002 * 118.92071 * 180.23027 * 8 7 6 27 27 H 1.07994 * 119.80499 * 179.97438 * 10 9 8 28 28 H 0.97007 * 119.99475 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2200 1.1374 0.0000 4 16 3.9310 0.7142 0.0007 5 6 3.5032 -0.9947 0.0002 6 6 4.4583 -2.1138 -0.0001 7 6 4.0270 -3.4391 0.1346 8 6 4.9596 -4.4531 0.1237 9 7 6.2541 -4.2171 0.0003 10 6 6.7524 -3.0099 -0.1261 11 6 5.9027 -1.8849 -0.1360 12 6 6.4220 -0.5841 -0.2712 13 1 5.8786 0.1582 -0.8370 14 6 7.6440 -0.2519 0.3283 15 7 8.2202 -1.0925 1.1474 16 14 8.4498 1.3920 -0.0427 17 1 7.9785 2.4061 0.9345 18 1 9.9249 1.2544 0.0594 19 1 8.0867 1.8225 -1.4168 20 7 2.2024 -1.1089 0.0001 21 1 -0.3633 0.0000 -1.0278 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.8153 2.1387 0.0036 25 1 2.9760 -3.6638 0.2416 26 1 4.6222 -5.4742 0.2242 27 1 7.8198 -2.8773 -0.2231 28 1 9.0665 -0.8626 1.5621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:40 Heat of formation + Delta-G solvation = 41.437641 kcal Electronic energy + Delta-G solvation = -14837.486592 eV Core-core repulsion = 12364.690276 eV Total energy + Delta-G solvation = -2472.796316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53703 -39.78393 -36.05582 -34.11609 -31.94383 -31.49352 -28.30669 -27.83295 -25.97079 -23.54082 -22.45698 -20.04261 -19.45571 -18.64701 -17.35620 -17.09592 -16.25152 -15.71013 -15.66473 -15.24772 -14.51264 -14.36845 -14.12433 -13.84398 -13.41917 -13.30099 -13.24791 -13.11782 -12.91492 -12.37836 -11.92852 -11.59857 -11.27753 -10.83151 -10.49039 -10.11814 -9.98178 -9.51780 -9.04436 -8.85614 -6.61332 -0.47911 0.65295 0.73735 0.98417 1.16695 1.39013 1.48775 1.53865 2.13789 2.15567 2.65347 3.28180 3.53693 4.10059 4.22527 4.37036 4.44178 4.51711 4.69499 4.81463 4.82971 4.94160 4.99264 5.08111 5.21348 5.46067 5.57818 5.71490 5.92868 6.15814 6.52780 6.57190 7.01690 7.65887 8.10744 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.010661 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.376229 B = 2625.882625 C = 3979.620002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.049 3.951 3 C -0.318 4.318 4 S 0.113 5.887 5 C 0.138 3.862 6 C -0.158 4.158 7 C -0.086 4.086 8 C -0.046 4.046 9 N -0.486 5.486 10 C 0.049 3.951 11 C 0.065 3.935 12 C -0.450 4.450 13 H 0.101 0.899 14 C 0.047 3.953 15 N -0.801 5.801 16 Si 0.973 3.027 17 H -0.256 1.256 18 H -0.258 1.258 19 H -0.249 1.249 20 N -0.519 5.519 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.196 0.804 25 H 0.128 0.872 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 6.900 -1.299 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.456 4.456 4 S 0.373 5.627 5 C -0.132 4.132 6 C -0.170 4.170 7 C -0.110 4.110 8 C -0.196 4.196 9 N -0.195 5.195 10 C -0.117 4.117 11 C 0.058 3.942 12 C -0.482 4.482 13 H 0.118 0.882 14 C -0.173 4.173 15 N -0.425 5.425 16 Si 0.792 3.208 17 H -0.180 1.180 18 H -0.182 1.182 19 H -0.172 1.172 20 N -0.236 5.236 21 H 0.100 0.900 22 H 0.086 0.914 23 H 0.113 0.887 24 H 0.213 0.787 25 H 0.146 0.854 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.450 6.264 -1.114 7.764 hybrid contribution -0.923 1.015 0.093 1.375 sum -5.373 7.279 -1.021 9.105 Atomic orbital electron populations 1.20418 0.85402 1.03745 1.03419 1.20691 0.99554 0.86513 1.01652 1.27599 0.98102 1.04085 1.15857 1.85466 1.04846 1.03637 1.68763 1.25413 0.91561 0.95390 1.00823 1.19418 0.91514 0.90882 1.15190 1.21832 1.00168 0.91890 0.97098 1.22055 0.87991 0.99062 1.10520 1.66802 1.16494 1.26120 1.10131 1.22787 0.99414 0.86340 1.03182 1.19833 0.89696 0.95656 0.89002 1.19756 1.04497 0.95926 1.28060 0.88230 1.26786 0.95609 1.02999 0.91885 1.69725 1.16205 1.37625 1.18929 0.85292 0.78267 0.76414 0.80847 1.18015 1.18221 1.17239 1.66426 1.04178 1.32147 1.20882 0.90006 0.91396 0.88729 0.78719 0.85434 0.82763 0.84098 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.28 71.24 0.73 -1.02 15 2 C 0.05 1.73 6.69 41.79 0.28 2.01 15 3 C -0.32 -10.49 11.11 66.91 0.74 -9.74 15 4 S 0.11 4.47 19.21 -56.49 -1.09 3.39 15 5 C 0.14 6.32 7.32 87.21 0.64 6.96 15 6 C -0.16 -7.84 6.11 -18.25 -0.11 -7.95 15 7 C -0.09 -3.97 9.77 22.59 0.22 -3.75 15 8 C -0.05 -2.08 11.10 84.54 0.94 -1.14 15 9 N -0.49 -24.29 10.26 -194.17 -1.99 -26.29 15 10 C 0.05 2.55 9.85 85.46 0.84 3.39 15 11 C 0.07 3.35 5.63 -19.74 -0.11 3.24 15 12 C -0.45 -21.59 7.35 23.33 0.17 -21.42 15 13 H 0.10 4.59 5.20 -13.17 -0.07 4.52 15 14 C 0.05 2.10 5.27 85.31 0.45 2.55 15 15 N -0.80 -37.59 11.31 21.86 0.25 -37.34 15 16 Si 0.97 33.43 29.57 68.60 2.03 35.46 15 17 H -0.26 -8.54 7.11 99.48 0.71 -7.83 15 18 H -0.26 -8.36 7.11 99.48 0.71 -7.66 15 19 H -0.25 -8.33 7.11 99.48 0.71 -7.62 15 20 N -0.52 -22.18 10.24 -178.18 -1.82 -24.00 15 21 H 0.08 1.80 8.14 -2.38 -0.02 1.78 15 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.09 1.79 8.11 -2.39 -0.02 1.77 15 24 H 0.20 4.83 8.06 -2.91 -0.02 4.81 15 25 H 0.13 5.38 7.94 -2.91 -0.02 5.36 15 26 H 0.16 5.88 8.06 -2.91 -0.02 5.85 15 27 H 0.14 7.30 6.79 -2.91 -0.02 7.28 15 28 H 0.30 12.62 8.29 -92.70 -0.77 11.85 15 Total: -1.00 -57.15 261.12 3.30 -53.85 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.14 Total: 21.80 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.79 Total: -26.87 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -3.57 Total: -87.63 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.46 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.09 Total: 3.39 kcal Total: -57.15 3.30 -53.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.288 kcal (2) G-P(sol) polarization free energy of solvation -57.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds