Wall clock time and date at job start Mon Mar 30 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38867 * 119.90703 * 2 1 4 4 C 1.38463 * 118.12748 * 180.28765 * 3 2 1 5 5 C 1.40387 * 117.85455 * 359.46182 * 4 3 2 6 6 C 1.46974 * 120.24060 * 180.25250 * 5 4 3 7 7 S 1.75668 * 125.23098 * 359.69786 * 6 5 4 8 8 C 1.75470 * 92.09149 * 179.97438 * 7 6 5 9 9 C 1.32479 * 111.38258 * 0.31005 * 8 7 6 10 10 C 1.39366 * 125.23573 * 180.02562 * 6 5 4 11 11 C 1.40566 * 123.71982 * 359.94249 * 10 6 5 12 12 H 1.08003 * 120.00331 * 335.99119 * 11 10 6 13 13 C 1.39954 * 119.99613 * 155.99400 * 11 10 6 14 14 N 1.30892 * 120.00196 * 350.25755 * 13 11 10 15 15 Si 1.86803 * 119.99725 * 170.25999 * 13 11 10 16 16 H 1.48501 * 109.47131 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46950 * 119.99763 * 15 13 11 18 18 H 1.48498 * 109.46926 * 239.99806 * 15 13 11 19 19 N 1.33251 * 119.51881 * 0.27829 * 5 4 3 20 20 N 1.28350 * 121.94574 * 359.97438 * 19 5 4 21 21 H 1.09004 * 109.47322 * 270.26205 * 1 2 3 22 22 H 1.09005 * 109.46990 * 30.25686 * 1 2 3 23 23 H 1.08994 * 109.47052 * 150.25919 * 1 2 3 24 24 H 1.08003 * 120.94116 * 0.03176 * 3 2 1 25 25 H 1.08000 * 121.07305 * 179.74253 * 4 3 2 26 26 H 1.08000 * 124.31036 * 180.02562 * 8 7 6 27 27 H 1.08002 * 122.78124 * 179.80352 * 9 8 7 28 28 H 0.96996 * 120.00132 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1994 1.2037 0.0000 4 6 3.5834 1.1608 -0.0061 5 6 4.2005 -0.1002 -0.0003 6 6 5.6664 -0.2069 -0.0008 7 16 6.7812 1.1505 -0.0158 8 6 8.1770 0.0872 -0.0057 9 6 7.8136 -1.1868 0.0013 10 6 6.3856 -1.4006 0.0041 11 6 5.7870 -2.6724 0.0114 12 1 4.7845 -2.7952 0.3941 13 6 6.4900 -3.7795 -0.4772 14 7 7.6213 -3.6079 -1.1129 15 14 5.8138 -5.5021 -0.2223 16 1 4.5296 -5.4250 0.5195 17 1 5.5850 -6.1442 -1.5416 18 1 6.7888 -6.3062 0.5573 19 7 3.4476 -1.1996 0.0051 20 7 2.1653 -1.1445 0.0057 21 1 -0.3634 0.0047 1.0277 22 1 -0.3633 0.8877 -0.5178 23 1 -0.3633 -0.8922 -0.5098 24 1 1.6733 2.1470 0.0005 25 1 4.1692 2.0680 -0.0106 26 1 9.2019 0.4278 -0.0096 27 1 8.5264 -1.9981 0.0050 28 1 8.1083 -4.3752 -1.4518 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259670114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:07 Heat of formation + Delta-G solvation = 67.715819 kcal Electronic energy + Delta-G solvation = -14776.201559 eV Core-core repulsion = 12304.544751 eV Total energy + Delta-G solvation = -2471.656808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74225 -36.45303 -33.33825 -32.95017 -32.26333 -29.25279 -27.39791 -25.58045 -23.39423 -22.21390 -21.15961 -18.97888 -17.35438 -16.39591 -15.63025 -15.19988 -14.82208 -14.23301 -14.06938 -13.56517 -12.56650 -12.53270 -12.48382 -12.04877 -11.88909 -11.79585 -11.54949 -11.23688 -11.06246 -10.55489 -10.39778 -9.82183 -9.57974 -9.38981 -9.26992 -9.06672 -8.44651 -7.31315 -7.20813 -7.04059 -4.53134 1.53436 1.78546 2.68186 2.92845 2.96714 3.03177 3.08334 3.52560 3.78262 3.81798 4.62642 5.04077 5.15040 5.29591 5.43101 5.57076 5.84669 5.90063 5.96054 6.00531 6.14135 6.48161 6.61225 6.76082 6.93207 7.05466 7.17885 7.28006 7.48083 7.69516 8.30831 8.46199 8.58152 9.73301 9.91559 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.010048 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.249262 B = 2786.009688 C = 4274.022733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.020 4.020 3 C -0.110 4.110 4 C -0.160 4.160 5 C 0.202 3.798 6 C -0.346 4.346 7 S -0.035 6.035 8 C -0.209 4.209 9 C -0.097 4.097 10 C 0.119 3.881 11 C -0.349 4.349 12 H 0.123 0.877 13 C 0.062 3.938 14 N -0.769 5.769 15 Si 0.925 3.075 16 H -0.248 1.248 17 H -0.269 1.269 18 H -0.269 1.269 19 N -0.265 5.265 20 N -0.233 5.233 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 3.528 1.237 5.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.166 4.166 3 C -0.138 4.138 4 C -0.190 4.190 5 C 0.066 3.934 6 C -0.465 4.465 7 S 0.219 5.781 8 C -0.343 4.343 9 C -0.129 4.129 10 C 0.108 3.892 11 C -0.380 4.380 12 H 0.141 0.859 13 C -0.160 4.160 14 N -0.392 5.392 15 Si 0.748 3.252 16 H -0.171 1.171 17 H -0.194 1.194 18 H -0.194 1.194 19 N -0.111 5.111 20 N -0.076 5.076 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.157 0.843 27 H 0.162 0.838 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.388 3.303 1.099 4.857 hybrid contribution 0.300 -0.411 -0.098 0.518 sum -3.088 2.892 1.001 4.347 Atomic orbital electron populations 1.20390 0.89332 1.02389 1.01932 1.22349 0.97775 0.91038 1.05469 1.21809 0.94402 0.98684 0.98895 1.22162 0.94682 0.98679 1.03449 1.20267 0.93097 0.89335 0.90720 1.21259 0.90884 0.93922 1.40395 1.82815 0.98064 1.11959 1.85257 1.24921 1.00278 0.97218 1.11878 1.21671 0.96851 0.95500 0.98882 1.18114 0.89873 0.92419 0.88821 1.20324 1.02223 0.89717 1.25718 0.85899 1.26451 0.93786 1.03294 0.92501 1.69792 1.12192 1.34516 1.22693 0.85928 0.80791 0.78874 0.79615 1.17112 1.19358 1.19420 1.73612 0.97108 1.25035 1.15339 1.72773 1.03184 1.24737 1.06915 0.91626 0.91816 0.91180 0.85366 0.85274 0.84316 0.83764 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.19 36.01 0.37 -0.77 15 2 C -0.02 -0.38 6.87 -82.27 -0.57 -0.95 15 3 C -0.11 -1.99 9.85 -39.27 -0.39 -2.37 15 4 C -0.16 -3.30 9.73 -38.69 -0.38 -3.68 15 5 C 0.20 4.94 6.81 -82.90 -0.56 4.38 15 6 C -0.35 -8.69 6.48 -35.62 -0.23 -8.92 15 7 S -0.04 -0.77 22.19 -107.50 -2.39 -3.15 15 8 C -0.21 -4.47 11.05 28.82 0.32 -4.16 15 9 C -0.10 -2.31 9.03 -39.08 -0.35 -2.66 15 10 C 0.12 3.08 5.67 -106.18 -0.60 2.48 15 11 C -0.35 -9.02 8.45 -38.06 -0.32 -9.34 15 12 H 0.12 3.29 5.80 -52.48 -0.30 2.98 15 13 C 0.06 1.47 5.39 -17.31 -0.09 1.37 15 14 N -0.77 -17.99 10.84 55.55 0.60 -17.39 15 15 Si 0.93 18.03 29.57 -169.99 -5.03 13.00 15 16 H -0.25 -4.99 7.11 56.52 0.40 -4.59 15 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 19 N -0.26 -6.71 8.60 33.25 0.29 -6.43 15 20 N -0.23 -5.36 11.42 33.66 0.38 -4.97 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 0.72 8.09 -51.93 -0.42 0.30 15 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15 25 H 0.13 2.43 7.36 -52.49 -0.39 2.05 15 26 H 0.14 2.50 8.06 -52.49 -0.42 2.08 15 27 H 0.14 3.38 6.43 -52.49 -0.34 3.04 15 28 H 0.29 6.04 8.30 -40.82 -0.34 5.70 15 LS Contribution 261.86 15.07 3.95 3.95 Total: -1.00 -27.84 261.86 -7.28 -35.12 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.27 Total: 4.49 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -2.81 Total: -24.61 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 1.27 Total: -28.79 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.39 Total: -3.15 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.84 -7.28 -35.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.834 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds