Wall clock time and date at job start Mon Mar 30 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38867 * 119.90703 * 2 1 4 4 C 1.38463 * 118.12748 * 180.28765 * 3 2 1 5 5 C 1.40387 * 117.85455 * 359.46182 * 4 3 2 6 6 C 1.46974 * 120.24060 * 180.25250 * 5 4 3 7 7 S 1.75668 * 125.23098 * 359.69786 * 6 5 4 8 8 C 1.75470 * 92.09149 * 179.97438 * 7 6 5 9 9 C 1.32479 * 111.38258 * 0.31005 * 8 7 6 10 10 C 1.39366 * 125.23573 * 180.02562 * 6 5 4 11 11 C 1.40566 * 123.71982 * 359.94249 * 10 6 5 12 12 H 1.08003 * 120.00331 * 335.99119 * 11 10 6 13 13 C 1.39954 * 119.99613 * 155.99400 * 11 10 6 14 14 N 1.30892 * 120.00196 * 350.25755 * 13 11 10 15 15 Si 1.86803 * 119.99725 * 170.25999 * 13 11 10 16 16 H 1.48501 * 109.47131 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46950 * 119.99763 * 15 13 11 18 18 H 1.48498 * 109.46926 * 239.99806 * 15 13 11 19 19 N 1.33251 * 119.51881 * 0.27829 * 5 4 3 20 20 N 1.28350 * 121.94574 * 359.97438 * 19 5 4 21 21 H 1.09004 * 109.47322 * 270.26205 * 1 2 3 22 22 H 1.09005 * 109.46990 * 30.25686 * 1 2 3 23 23 H 1.08994 * 109.47052 * 150.25919 * 1 2 3 24 24 H 1.08003 * 120.94116 * 0.03176 * 3 2 1 25 25 H 1.08000 * 121.07305 * 179.74253 * 4 3 2 26 26 H 1.08000 * 124.31036 * 180.02562 * 8 7 6 27 27 H 1.08002 * 122.78124 * 179.80352 * 9 8 7 28 28 H 0.96996 * 120.00132 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1994 1.2037 0.0000 4 6 3.5834 1.1608 -0.0061 5 6 4.2005 -0.1002 -0.0003 6 6 5.6664 -0.2069 -0.0008 7 16 6.7812 1.1505 -0.0158 8 6 8.1770 0.0872 -0.0057 9 6 7.8136 -1.1868 0.0013 10 6 6.3856 -1.4006 0.0041 11 6 5.7870 -2.6724 0.0114 12 1 4.7845 -2.7952 0.3941 13 6 6.4900 -3.7795 -0.4772 14 7 7.6213 -3.6079 -1.1129 15 14 5.8138 -5.5021 -0.2223 16 1 4.5296 -5.4250 0.5195 17 1 5.5850 -6.1442 -1.5416 18 1 6.7888 -6.3062 0.5573 19 7 3.4476 -1.1996 0.0051 20 7 2.1653 -1.1445 0.0057 21 1 -0.3634 0.0047 1.0277 22 1 -0.3633 0.8877 -0.5178 23 1 -0.3633 -0.8922 -0.5098 24 1 1.6733 2.1470 0.0005 25 1 4.1692 2.0680 -0.0106 26 1 9.2019 0.4278 -0.0096 27 1 8.5264 -1.9981 0.0050 28 1 8.1083 -4.3752 -1.4518 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259670114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:07 Heat of formation + Delta-G solvation = 51.778294 kcal Electronic energy + Delta-G solvation = -14776.892662 eV Core-core repulsion = 12304.544751 eV Total energy + Delta-G solvation = -2472.347911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.40224 -38.20385 -35.03466 -34.53600 -33.91454 -30.87625 -28.96443 -27.27259 -25.06399 -23.80406 -22.85015 -20.73579 -19.09687 -18.04957 -17.37055 -16.84570 -16.31932 -15.81876 -15.67910 -15.19493 -14.22198 -14.00056 -13.88024 -13.65199 -13.43651 -13.20107 -13.12841 -12.84841 -12.74215 -12.28434 -12.03182 -11.52231 -11.25954 -11.03970 -11.01414 -10.67679 -10.10136 -9.07717 -8.93414 -8.77042 -6.35676 -0.13641 0.18361 1.00051 1.31488 1.33338 1.35903 1.51385 1.74014 2.07730 2.18210 2.93336 3.32706 3.57425 3.83247 3.94947 4.07923 4.35639 4.38495 4.69863 4.78535 4.85427 4.95354 5.07570 5.17280 5.32664 5.38760 5.48628 5.59252 5.75460 5.93538 6.46952 6.63103 6.79012 8.06119 8.23894 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.010048 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.249262 B = 2786.009688 C = 4274.022733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.007 4.007 3 C -0.097 4.097 4 C -0.163 4.163 5 C 0.173 3.827 6 C -0.384 4.384 7 S 0.010 5.990 8 C -0.199 4.199 9 C -0.125 4.125 10 C 0.093 3.907 11 C -0.393 4.393 12 H 0.101 0.899 13 C 0.033 3.967 14 N -0.793 5.793 15 Si 0.986 3.014 16 H -0.266 1.266 17 H -0.262 1.262 18 H -0.250 1.250 19 N -0.304 5.304 20 N -0.276 5.276 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.185 0.815 25 H 0.147 0.853 26 H 0.176 0.824 27 H 0.140 0.860 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 5.374 1.208 7.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C -0.124 4.124 4 C -0.193 4.193 5 C 0.034 3.966 6 C -0.502 4.502 7 S 0.265 5.735 8 C -0.333 4.333 9 C -0.157 4.157 10 C 0.082 3.918 11 C -0.424 4.424 12 H 0.119 0.881 13 C -0.187 4.187 14 N -0.417 5.417 15 Si 0.806 3.194 16 H -0.190 1.190 17 H -0.186 1.186 18 H -0.173 1.173 19 N -0.148 5.148 20 N -0.117 5.117 21 H 0.104 0.896 22 H 0.120 0.880 23 H 0.087 0.913 24 H 0.202 0.798 25 H 0.165 0.835 26 H 0.193 0.807 27 H 0.158 0.842 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.716 5.143 1.068 7.059 hybrid contribution 0.464 -0.715 -0.080 0.856 sum -4.252 4.428 0.988 6.218 Atomic orbital electron populations 1.20588 0.85268 1.04250 1.03798 1.23332 1.00430 0.90460 1.01335 1.22411 0.93348 1.00563 0.96121 1.22435 0.96316 0.97751 1.02783 1.20580 0.93219 0.90843 0.91915 1.21783 0.92208 0.95376 1.40878 1.82393 0.96721 1.10098 1.84293 1.25369 1.02103 0.96474 1.09315 1.21603 0.96018 0.96491 1.01561 1.18514 0.91178 0.93034 0.89104 1.20255 1.02054 0.91203 1.28884 0.88101 1.27051 0.94004 1.05822 0.91832 1.69779 1.12888 1.35802 1.23214 0.85068 0.79579 0.75104 0.79619 1.19040 1.18598 1.17333 1.73549 0.98344 1.26484 1.16433 1.72725 1.02609 1.27148 1.09235 0.89568 0.88046 0.91282 0.79824 0.83499 0.80670 0.84215 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.91 10.19 71.24 0.73 -1.18 15 2 C -0.01 -0.27 6.87 42.68 0.29 0.03 15 3 C -0.10 -3.13 9.85 22.47 0.22 -2.91 15 4 C -0.16 -6.47 9.73 22.85 0.22 -6.25 15 5 C 0.17 8.63 6.81 41.74 0.28 8.91 15 6 C -0.38 -19.78 6.48 24.83 0.16 -19.62 15 7 S 0.01 0.41 22.19 -56.49 -1.25 -0.84 15 8 C -0.20 -8.37 11.05 66.69 0.74 -7.63 15 9 C -0.12 -6.08 9.03 22.71 0.21 -5.87 15 10 C 0.09 5.04 5.67 -20.87 -0.12 4.92 15 11 C -0.39 -21.58 8.45 23.25 0.20 -21.38 15 12 H 0.10 5.84 5.80 -2.91 -0.02 5.82 15 13 C 0.03 1.61 5.39 85.25 0.46 2.07 15 14 N -0.79 -38.40 10.84 21.83 0.24 -38.16 15 15 Si 0.99 38.47 29.57 68.60 2.03 40.49 15 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 18 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 19 N -0.30 -15.99 8.60 -48.70 -0.42 -16.41 15 20 N -0.28 -12.78 11.42 -47.42 -0.54 -13.33 15 21 H 0.09 1.77 8.14 -2.38 -0.02 1.75 15 22 H 0.10 1.69 8.09 -2.38 -0.02 1.67 15 23 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.18 3.87 8.06 -2.91 -0.02 3.84 15 25 H 0.15 5.16 7.36 -2.91 -0.02 5.14 15 26 H 0.18 5.91 8.06 -2.91 -0.02 5.89 15 27 H 0.14 6.80 6.43 -2.91 -0.02 6.78 15 28 H 0.30 12.79 8.30 -92.71 -0.77 12.02 15 Total: -1.00 -64.67 261.86 4.63 -60.04 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.19 Total: 17.12 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 3.39 Total: -48.92 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.72 Total: -67.90 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.25 Total: -0.84 kcal Total: -64.67 4.63 -60.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.819 kcal (2) G-P(sol) polarization free energy of solvation -64.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds