Wall clock time and date at job start Mon Mar 30 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99550 * 2 1 4 4 H 1.48508 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47421 * 299.99624 * 3 2 1 6 6 H 1.48500 * 109.47352 * 60.00264 * 3 2 1 7 7 C 1.37871 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47390 * 179.97438 * 9 7 2 11 11 C 1.37928 * 119.55586 * 124.72504 * 10 9 7 12 12 C 1.39835 * 119.00975 * 180.27922 * 11 10 9 13 13 C 1.48226 * 120.90572 * 180.02562 * 12 11 10 14 14 C 1.34927 * 122.97521 * 184.73263 * 13 12 11 15 15 S 1.76174 * 107.86392 * 179.91526 * 14 13 12 16 16 C 1.70915 * 90.44531 * 0.29177 * 15 14 13 17 17 N 1.28749 * 110.51127 * 359.82672 * 16 15 14 18 18 C 1.39870 * 118.18253 * 0.02562 * 12 11 10 19 19 C 1.37883 * 119.01713 * 359.97438 * 18 12 11 20 20 N 1.31954 * 119.55613 * 305.00256 * 10 9 7 21 21 H 0.96992 * 120.00328 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47408 * 59.99929 * 9 7 2 23 23 H 1.09000 * 109.47262 * 300.00038 * 9 7 2 24 24 H 1.07994 * 120.49725 * 0.29706 * 11 10 9 25 25 H 1.08000 * 126.07072 * 359.97438 * 14 13 12 26 26 H 1.07999 * 124.74312 * 179.86822 * 16 15 14 27 27 H 1.08007 * 120.49538 * 179.97438 * 18 12 11 28 28 H 1.07998 * 119.56132 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.1530 -4.6059 0.9866 12 6 3.0711 -5.6606 0.9791 13 6 3.0260 -6.7167 2.0182 14 6 3.9454 -7.7003 2.1059 15 16 3.5129 -8.7239 3.4730 16 6 2.1460 -7.7476 3.7887 17 7 2.0758 -6.7818 2.9402 18 6 4.0332 -5.6917 -0.0357 19 6 4.0390 -4.6895 -0.9827 20 7 3.1538 -3.7115 -0.9397 21 1 -0.4850 0.8399 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 1.3945 -4.5451 1.7530 25 1 4.7961 -7.8356 1.4544 26 1 1.4403 -7.9168 4.5886 27 1 4.7607 -6.4889 -0.0771 28 1 4.7782 -4.7046 -1.7699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259672294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:03 Heat of formation + Delta-G solvation = 74.857780 kcal Electronic energy + Delta-G solvation = -14297.514827 eV Core-core repulsion = 11826.167717 eV Total energy + Delta-G solvation = -2471.347110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24800 -38.95108 -33.63980 -32.65214 -31.31579 -29.58467 -27.57232 -25.63991 -23.62787 -22.97712 -21.38425 -19.40130 -18.24606 -16.49572 -16.24051 -15.40945 -15.11338 -14.85081 -14.68788 -14.28780 -13.46154 -13.29697 -13.20959 -12.54350 -12.00921 -11.79456 -11.34075 -11.22899 -10.71070 -10.58438 -10.11573 -9.83263 -9.72479 -9.63563 -9.36947 -8.66277 -8.41606 -8.37450 -8.13942 -5.98151 -3.98553 0.41951 1.20406 1.52543 1.56924 1.78680 3.03040 3.35452 3.42321 3.48570 3.99491 4.44075 4.58958 4.83157 5.00303 5.05006 5.14459 5.38925 5.40872 5.57851 5.75854 5.80077 6.23923 6.40035 6.54664 6.71400 7.31224 7.54405 7.58234 7.59673 7.98781 8.34462 8.83998 9.04808 9.63458 11.13262 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.004828 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.221507 B = 5797.649860 C = 6180.028586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.498 4.498 8 H 0.060 0.940 9 C 0.058 3.942 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.007 3.993 13 C 0.115 3.885 14 C -0.245 4.245 15 S 0.111 5.889 16 C 0.028 3.972 17 N -0.455 5.455 18 C -0.189 4.189 19 C 0.097 3.903 20 N -0.467 5.467 21 H 0.261 0.739 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.138 0.862 25 H 0.181 0.819 26 H 0.202 0.798 27 H 0.124 0.876 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -18.234 6.048 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.021 3.979 10 C 0.038 3.962 11 C -0.168 4.168 12 C -0.003 4.003 13 C -0.015 4.015 14 C -0.384 4.384 15 S 0.364 5.636 16 C -0.272 4.272 17 N -0.167 5.167 18 C -0.210 4.210 19 C -0.061 4.061 20 N -0.176 5.176 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.156 0.844 25 H 0.198 0.802 26 H 0.219 0.781 27 H 0.142 0.858 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.200 -17.991 5.961 20.274 hybrid contribution 0.471 0.790 0.119 0.927 sum 7.671 -17.201 6.080 19.791 Atomic orbital electron populations 1.69958 1.05974 1.26646 1.51172 1.24989 0.94900 0.99259 0.95431 0.86445 0.80124 0.83446 0.77477 1.19737 1.20966 1.21089 1.21026 0.93171 0.89464 1.49962 0.92163 1.18366 0.91845 0.88957 0.98780 1.22280 0.92652 0.94032 0.87262 1.22214 0.99720 0.94132 1.00720 1.18297 0.96345 0.92951 0.92732 1.18897 0.91165 0.95933 0.95509 1.27069 1.06764 1.00291 1.04300 1.83918 1.23391 1.31311 1.24996 1.28372 1.01487 0.94616 1.02682 1.66169 1.25387 1.21410 1.03775 1.21853 1.00365 1.01793 0.97022 1.22663 0.96664 0.89816 0.96933 1.67686 1.02923 1.22235 1.24745 0.92967 0.93893 0.94436 0.84388 0.80207 0.78136 0.85796 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 15 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 15 4 H -0.27 -6.71 7.11 56.52 0.40 -6.30 15 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.50 -14.48 8.91 -34.44 -0.31 -14.78 15 8 H 0.06 1.77 7.68 -52.49 -0.40 1.37 15 9 C 0.06 1.55 5.37 -29.03 -0.16 1.39 15 10 C 0.17 4.04 6.12 -82.65 -0.51 3.53 15 11 C -0.15 -2.99 9.32 -39.10 -0.36 -3.36 15 12 C 0.01 0.13 5.91 -104.58 -0.62 -0.49 15 13 C 0.12 1.72 6.65 -84.62 -0.56 1.16 15 14 C -0.24 -2.78 10.66 29.56 0.32 -2.47 15 15 S 0.11 0.98 23.21 -107.50 -2.49 -1.51 15 16 C 0.03 0.30 12.20 51.47 0.63 0.93 15 17 N -0.45 -6.78 10.03 -12.29 -0.12 -6.90 15 18 C -0.19 -2.91 9.56 -39.10 -0.37 -3.28 15 19 C 0.10 1.68 11.17 -17.62 -0.20 1.48 15 20 N -0.47 -10.38 9.95 -9.58 -0.10 -10.48 15 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.04 1.22 8.14 -51.93 -0.42 0.79 15 23 H 0.04 1.02 7.87 -51.93 -0.41 0.61 15 24 H 0.14 2.79 7.69 -52.49 -0.40 2.39 15 25 H 0.18 1.60 7.01 -52.49 -0.37 1.23 15 26 H 0.20 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.12 1.41 6.83 -52.48 -0.36 1.05 15 28 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 268.30 15.07 4.04 4.04 Total: -1.00 -33.09 268.30 -7.54 -40.63 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.34 Total: -2.32 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.24 Total: -14.39 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.52 Total: -43.69 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.09 -7.54 -40.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.484 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds