Wall clock time and date at job start Mon Mar 30 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99550 * 2 1 4 4 H 1.48508 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47421 * 299.99624 * 3 2 1 6 6 H 1.48500 * 109.47352 * 60.00264 * 3 2 1 7 7 C 1.37871 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47390 * 179.97438 * 9 7 2 11 11 C 1.37928 * 119.55586 * 124.72504 * 10 9 7 12 12 C 1.39835 * 119.00975 * 180.27922 * 11 10 9 13 13 C 1.48226 * 120.90572 * 180.02562 * 12 11 10 14 14 C 1.34927 * 122.97521 * 184.73263 * 13 12 11 15 15 S 1.76174 * 107.86392 * 179.91526 * 14 13 12 16 16 C 1.70915 * 90.44531 * 0.29177 * 15 14 13 17 17 N 1.28749 * 110.51127 * 359.82672 * 16 15 14 18 18 C 1.39870 * 118.18253 * 0.02562 * 12 11 10 19 19 C 1.37883 * 119.01713 * 359.97438 * 18 12 11 20 20 N 1.31954 * 119.55613 * 305.00256 * 10 9 7 21 21 H 0.96992 * 120.00328 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47408 * 59.99929 * 9 7 2 23 23 H 1.09000 * 109.47262 * 300.00038 * 9 7 2 24 24 H 1.07994 * 120.49725 * 0.29706 * 11 10 9 25 25 H 1.08000 * 126.07072 * 359.97438 * 14 13 12 26 26 H 1.07999 * 124.74312 * 179.86822 * 16 15 14 27 27 H 1.08007 * 120.49538 * 179.97438 * 18 12 11 28 28 H 1.07998 * 119.56132 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.1530 -4.6059 0.9866 12 6 3.0711 -5.6606 0.9791 13 6 3.0260 -6.7167 2.0182 14 6 3.9454 -7.7003 2.1059 15 16 3.5129 -8.7239 3.4730 16 6 2.1460 -7.7476 3.7887 17 7 2.0758 -6.7818 2.9402 18 6 4.0332 -5.6917 -0.0357 19 6 4.0390 -4.6895 -0.9827 20 7 3.1538 -3.7115 -0.9397 21 1 -0.4850 0.8399 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 1.3945 -4.5451 1.7530 25 1 4.7961 -7.8356 1.4544 26 1 1.4403 -7.9168 4.5886 27 1 4.7607 -6.4889 -0.0771 28 1 4.7782 -4.7046 -1.7699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259672294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:03 Heat of formation + Delta-G solvation = 52.424336 kcal Electronic energy + Delta-G solvation = -14298.487614 eV Core-core repulsion = 11826.167717 eV Total energy + Delta-G solvation = -2472.319897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43849 -40.18132 -35.58231 -34.11912 -33.07411 -30.69405 -29.41385 -26.74226 -25.37559 -24.42389 -22.84949 -20.49989 -19.28127 -18.49341 -17.60144 -16.84798 -16.64312 -16.11055 -15.94418 -15.71158 -14.94175 -14.50395 -14.37112 -14.14543 -13.88176 -13.44930 -12.92318 -12.69831 -12.62824 -12.41813 -11.78427 -11.54983 -11.29842 -10.65051 -10.63835 -10.45784 -10.17651 -9.76860 -9.42388 -8.21487 -6.31165 -0.50916 0.31840 0.36868 0.43543 0.69736 1.38018 1.39430 1.53213 1.95222 2.40541 3.03098 3.09712 3.12723 3.63860 3.79529 4.00726 4.14632 4.25732 4.40824 4.43857 4.73936 4.82199 4.95659 5.12212 5.27015 5.30256 5.47111 5.71729 5.86893 6.15594 6.74114 6.77482 7.30001 7.36726 8.90509 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.004828 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.221507 B = 5797.649860 C = 6180.028586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.066 3.934 10 C 0.143 3.857 11 C -0.166 4.166 12 C 0.014 3.986 13 C 0.071 3.929 14 C -0.234 4.234 15 S 0.202 5.798 16 C 0.015 3.985 17 N -0.508 5.508 18 C -0.166 4.166 19 C 0.093 3.907 20 N -0.509 5.509 21 H 0.266 0.734 22 H 0.010 0.990 23 H 0.015 0.985 24 H 0.122 0.878 25 H 0.210 0.790 26 H 0.229 0.771 27 H 0.179 0.821 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -20.599 6.751 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.029 3.971 10 C 0.007 3.993 11 C -0.187 4.187 12 C 0.003 3.997 13 C -0.059 4.059 14 C -0.375 4.375 15 S 0.456 5.544 16 C -0.284 4.284 17 N -0.221 5.221 18 C -0.186 4.186 19 C -0.064 4.064 20 N -0.219 5.219 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.033 0.967 24 H 0.140 0.860 25 H 0.227 0.773 26 H 0.245 0.755 27 H 0.196 0.804 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.136 -20.374 6.681 23.717 hybrid contribution -0.357 1.237 -0.006 1.288 sum 9.779 -19.137 6.676 22.504 Atomic orbital electron populations 1.70082 1.07580 1.27901 1.51701 1.25940 0.95875 1.03172 0.94726 0.85324 0.78695 0.78506 0.78051 1.19254 1.19955 1.19904 1.21263 0.92910 0.90929 1.50277 0.92999 1.18030 0.92298 0.90707 0.96076 1.21596 0.93658 0.94266 0.89739 1.21991 1.01144 0.95422 1.00162 1.18630 0.95086 0.92246 0.93706 1.18731 0.93483 0.97193 0.96457 1.27532 1.05951 0.99002 1.04971 1.83665 1.20519 1.28271 1.21989 1.28886 1.02992 0.94101 1.02397 1.66121 1.26920 1.23877 1.05229 1.22354 0.99786 1.01866 0.94627 1.23359 0.95897 0.88889 0.98263 1.67512 1.04147 1.25032 1.25204 0.92530 0.97225 0.96691 0.86006 0.77278 0.75466 0.80400 0.79381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.56 13.29 21.45 0.28 -58.28 15 2 C 0.00 0.02 5.46 84.65 0.46 0.48 15 3 Si 0.97 46.75 29.54 68.60 2.03 48.77 15 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 5 H -0.27 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.27 -12.62 7.11 99.48 0.71 -11.92 15 7 C -0.52 -31.66 8.91 25.60 0.23 -31.43 15 8 H 0.05 3.19 7.68 -2.91 -0.02 3.17 15 9 C 0.07 3.87 5.37 29.10 0.16 4.03 15 10 C 0.14 7.07 6.12 42.47 0.26 7.33 15 11 C -0.17 -7.20 9.32 22.58 0.21 -6.99 15 12 C 0.01 0.48 5.91 -19.84 -0.12 0.36 15 13 C 0.07 2.02 6.65 40.93 0.27 2.29 15 14 C -0.23 -4.34 10.66 67.06 0.71 -3.63 15 15 S 0.20 2.68 23.21 -56.49 -1.31 1.37 15 16 C 0.01 0.28 12.20 130.69 1.59 1.87 15 17 N -0.51 -14.83 10.03 -192.80 -1.93 -16.77 15 18 C -0.17 -4.62 9.56 22.58 0.22 -4.40 15 19 C 0.09 3.08 11.17 84.59 0.94 4.03 15 20 N -0.51 -23.30 9.95 -184.21 -1.83 -25.14 15 21 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 22 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 23 H 0.01 0.90 7.87 -2.39 -0.02 0.88 15 24 H 0.12 5.47 7.69 -2.91 -0.02 5.44 15 25 H 0.21 2.41 7.01 -2.91 -0.02 2.39 15 26 H 0.23 2.59 8.06 -2.91 -0.02 2.57 15 27 H 0.18 2.96 6.83 -2.91 -0.02 2.94 15 28 H 0.19 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -78.06 268.30 3.36 -74.71 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 1.18 Total: 1.39 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.94 Total: -26.06 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -3.48 Total: -100.18 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.37 kcal Total: -78.06 3.36 -74.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.132 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds