Wall clock time and date at job start Mon Mar 30 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32154 * 119.99906 * 2 1 4 4 C 1.32121 * 119.99707 * 179.77324 * 3 2 1 5 5 C 1.50703 * 119.99804 * 180.25697 * 4 3 2 6 6 C 1.50700 * 109.47071 * 265.24936 * 5 4 3 7 7 H 1.07998 * 119.99917 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99674 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46820 * 60.00441 * 10 8 6 12 12 H 1.48503 * 109.46621 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47380 * 300.00078 * 10 8 6 14 14 C 1.38388 * 120.00013 * 0.50302 * 4 3 2 15 15 N 1.32130 * 119.99698 * 359.75222 * 14 4 3 16 16 C 1.32153 * 119.99601 * 359.97438 * 15 14 4 17 17 C 1.50702 * 119.99193 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.47429 * 270.01846 * 17 16 15 19 19 F 1.39897 * 109.47169 * 30.02542 * 17 16 15 20 20 F 1.39908 * 109.46549 * 150.02103 * 17 16 15 21 21 H 1.09001 * 109.46953 * 269.71963 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.71561 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72191 * 1 2 3 24 24 H 1.08995 * 109.47172 * 25.25221 * 5 4 3 25 25 H 1.09008 * 109.46819 * 145.25137 * 5 4 3 26 26 H 0.96997 * 120.00194 * 179.97438 * 9 8 6 27 27 H 1.08001 * 120.00162 * 179.72475 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0045 5 6 4.2425 2.4496 0.0104 6 6 4.6004 2.8293 -1.4034 7 1 4.3108 2.1898 -2.2241 8 6 5.2976 3.9932 -1.6491 9 7 5.6507 4.7717 -0.6497 10 14 5.7418 4.4635 -3.4015 11 1 4.5011 4.6123 -4.2037 12 1 6.4842 5.7496 -3.3957 13 1 6.5928 3.4028 -3.9982 14 6 4.1809 -0.0540 -0.0013 15 7 3.5202 -1.1982 -0.0063 16 6 2.1987 -1.1981 -0.0054 17 6 1.4452 -2.5032 -0.0118 18 9 1.2114 -2.9003 -1.3327 19 9 2.2015 -3.4815 0.6425 20 9 0.2230 -2.3391 0.6491 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3634 0.8925 -0.5094 23 1 -0.3633 -0.8875 -0.5181 24 1 3.6178 3.2278 0.4486 25 1 5.1535 2.3405 0.5990 26 1 6.1414 5.5903 -0.8225 27 1 5.2610 -0.0541 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683656.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:38 Heat of formation + Delta-G solvation = -128.756764 kcal Electronic energy + Delta-G solvation = -17551.559103 eV Core-core repulsion = 14086.772993 eV Total energy + Delta-G solvation = -3464.786110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.35060 -48.85956 -48.75854 -42.38714 -36.28812 -35.65241 -34.36856 -30.93965 -29.68137 -27.34995 -25.22648 -24.40207 -22.91217 -19.96625 -19.76756 -19.69696 -18.63460 -18.43735 -16.90881 -16.35195 -16.03006 -15.79364 -15.62021 -15.55985 -15.23207 -15.02824 -14.92360 -14.42093 -14.12638 -13.80092 -13.64021 -13.56938 -12.90926 -12.84535 -12.70565 -12.57622 -12.29950 -12.03683 -11.55078 -10.65763 -10.29429 -10.24574 -8.27022 -6.39728 -0.62018 -0.11813 1.28679 1.42565 1.43660 1.51990 2.26571 2.33131 2.43673 2.70117 2.91516 3.08425 3.23359 3.24158 3.49144 3.91057 4.05255 4.28618 4.55675 4.61662 4.97914 5.15282 5.27327 5.29979 5.63547 5.96834 6.00539 6.59341 6.67837 7.28904 8.83368 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.005591 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.753974 B = 5006.610599 C = 5068.675343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.133 3.867 3 N -0.464 5.464 4 C 0.153 3.847 5 C 0.069 3.931 6 C -0.534 4.534 7 H 0.052 0.948 8 C 0.018 3.982 9 N -0.920 5.920 10 Si 0.964 3.036 11 H -0.274 1.274 12 H -0.279 1.279 13 H -0.266 1.266 14 C 0.043 3.957 15 N -0.403 5.403 16 C -0.066 4.066 17 C 0.545 3.455 18 F -0.170 7.170 19 F -0.168 7.168 20 F -0.154 7.154 21 H 0.111 0.889 22 H 0.089 0.911 23 H 0.101 0.899 24 H 0.021 0.979 25 H 0.043 0.957 26 H 0.269 0.731 27 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -12.187 1.414 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.008 4.008 3 N -0.180 5.180 4 C 0.013 3.987 5 C 0.031 3.969 6 C -0.572 4.572 7 H 0.070 0.930 8 C -0.182 4.182 9 N -0.558 5.558 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.204 1.204 13 H -0.190 1.190 14 C -0.119 4.119 15 N -0.117 5.117 16 C -0.207 4.207 17 C 0.489 3.511 18 F -0.151 7.151 19 F -0.149 7.149 20 F -0.135 7.135 21 H 0.130 0.870 22 H 0.108 0.892 23 H 0.120 0.880 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.741 -12.087 1.463 14.988 hybrid contribution 0.457 0.383 -0.704 0.923 sum -8.285 -11.704 0.759 14.359 Atomic orbital electron populations 1.21275 0.84409 1.05517 1.05745 1.22684 1.00360 0.87332 0.90399 1.68495 1.09239 1.28420 1.11816 1.23230 0.90163 0.98906 0.86414 1.18152 0.94021 0.86964 0.97797 1.21048 1.36908 1.07525 0.91745 0.93012 1.25755 0.95145 0.95784 1.01535 1.70022 1.39053 1.13778 1.32990 0.85511 0.78494 0.77866 0.79273 1.19879 1.20366 1.19027 1.23806 1.02872 0.86407 0.98808 1.67922 1.06994 1.30875 1.05874 1.21981 0.92994 0.94414 1.11344 1.17302 0.77027 0.82600 0.74198 1.93234 1.94587 1.91597 1.35699 1.93213 1.76045 1.64546 1.81139 1.93211 1.44198 1.95278 1.80860 0.87039 0.89215 0.88031 0.96046 0.93845 0.92157 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 8.59 71.24 0.61 -1.98 15 2 C 0.13 4.37 6.76 42.54 0.29 4.65 15 3 N -0.46 -18.70 10.35 -171.51 -1.77 -20.47 15 4 C 0.15 6.46 5.98 42.55 0.25 6.71 15 5 C 0.07 3.39 5.26 29.10 0.15 3.54 15 6 C -0.53 -28.49 9.09 25.60 0.23 -28.25 15 7 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 8 C 0.02 0.96 5.46 84.65 0.46 1.42 15 9 N -0.92 -51.81 13.29 21.45 0.28 -51.53 15 10 Si 0.96 42.06 29.54 68.60 2.03 44.09 15 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 13 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 14 C 0.04 1.60 10.90 84.68 0.92 2.52 15 15 N -0.40 -14.35 10.13 -183.29 -1.86 -16.21 15 16 C -0.07 -2.15 6.29 42.54 0.27 -1.88 15 17 C 0.54 14.58 2.99 71.24 0.21 14.79 15 18 F -0.17 -4.50 17.30 44.97 0.78 -3.72 15 19 F -0.17 -4.68 17.05 44.97 0.77 -3.92 15 20 F -0.15 -3.41 13.75 44.97 0.62 -2.79 15 21 H 0.11 2.14 8.04 -2.39 -0.02 2.12 15 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.10 1.96 6.03 -2.39 -0.01 1.95 15 24 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 25 H 0.04 2.14 8.12 -2.38 -0.02 2.12 15 26 H 0.27 14.30 8.31 -92.71 -0.77 13.53 15 27 H 0.20 6.44 8.06 -2.91 -0.02 6.41 15 Total: -1.00 -59.07 256.64 5.46 -53.61 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.21 Total: -0.59 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 3.41 Total: 1.53 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -3.35 Total: -88.21 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.16 Total: -10.43 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.07 5.46 -53.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683656.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.146 kcal (2) G-P(sol) polarization free energy of solvation -59.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds