Wall clock time and date at job start Mon Mar 30 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99884 * 2 1 4 4 H 1.48504 * 109.46951 * 85.09855 * 3 2 1 5 5 H 1.48494 * 109.47373 * 325.09624 * 3 2 1 6 6 H 1.48494 * 109.47081 * 205.09415 * 3 2 1 7 7 C 1.37874 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00552 * 172.85406 * 7 2 1 9 9 C 1.50697 * 119.99900 * 352.85715 * 7 2 1 10 10 H 1.08993 * 110.31318 * 58.49754 * 9 7 2 11 11 C 1.54474 * 110.34817 * 180.79540 * 9 7 2 12 12 C 1.54452 * 101.87984 * 144.39883 * 11 9 7 13 13 C 1.51360 * 104.97000 * 334.45630 * 12 11 9 14 14 N 1.34511 * 141.83698 * 196.86060 * 13 12 11 15 15 C 1.31402 * 108.65689 * 179.97438 * 14 13 12 16 16 C 1.47039 * 125.76176 * 179.97438 * 15 14 13 17 17 C 1.36145 * 126.61549 * 359.97438 * 16 15 14 18 18 N 1.33972 * 107.47953 * 179.97438 * 17 16 15 19 19 C 1.30441 * 108.95740 * 359.97438 * 18 17 16 20 20 O 1.33939 * 109.10843 * 359.73327 * 19 18 17 21 21 O 1.34471 * 108.48592 * 359.97438 * 15 14 13 22 22 C 1.34283 * 110.36272 * 16.85468 * 13 12 11 23 23 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 24 24 H 1.09007 * 110.94557 * 262.55082 * 11 9 7 25 25 H 1.09007 * 110.94859 * 26.24995 * 11 9 7 26 26 H 1.09002 * 110.34816 * 215.57911 * 12 11 9 27 27 H 1.09000 * 110.42910 * 93.37185 * 12 11 9 28 28 H 1.07996 * 126.26217 * 359.97438 * 17 16 15 29 29 H 1.08007 * 125.44320 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3930 2.1063 1.3950 5 1 1.5023 2.6206 -0.8011 6 1 3.5946 1.4126 -0.5938 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1976 -0.1169 9 6 1.2598 -2.4941 0.1612 10 1 0.5183 -2.6063 -0.6297 11 6 2.2459 -3.6831 0.1484 12 6 1.5944 -4.6474 1.1639 13 6 0.7812 -3.7589 2.0806 14 7 0.1707 -3.7525 3.2791 15 6 -0.3830 -2.5751 3.4626 16 6 -1.1475 -2.1603 4.6482 17 6 -1.4117 -2.9161 5.7493 18 7 -2.1327 -2.1630 6.5907 19 6 -2.3183 -0.9883 6.0550 20 8 -1.7175 -0.9521 4.8585 21 8 -0.1327 -1.8133 2.3831 22 6 0.5945 -2.5538 1.5184 23 1 -0.4850 0.8400 0.0004 24 1 2.2972 -4.1362 -0.8417 25 1 3.2351 -3.3727 0.4850 26 1 2.3611 -5.1757 1.7306 27 1 0.9457 -5.3580 0.6517 28 1 -1.0976 -3.9361 5.9144 29 1 -2.8654 -0.1736 6.5061 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:51 Heat of formation + Delta-G solvation = 63.045862 kcal Electronic energy + Delta-G solvation = -17256.926511 eV Core-core repulsion = 14342.314327 eV Total energy + Delta-G solvation = -2914.612184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.23081 -42.42382 -36.61041 -34.76074 -33.81968 -32.48433 -30.78480 -27.91942 -27.11587 -24.04545 -23.49134 -22.61154 -20.90935 -19.92817 -19.78177 -17.74011 -16.86722 -16.61916 -16.09624 -15.57188 -14.90634 -14.45979 -14.22899 -13.83290 -13.28904 -13.04819 -12.35758 -12.03530 -11.57855 -11.35977 -11.31938 -11.02907 -10.71875 -10.66948 -10.58662 -10.35163 -10.10862 -9.64117 -9.46643 -9.14279 -8.64891 -7.32462 -6.28611 -4.36878 1.05416 2.46320 2.49150 2.89252 3.15654 3.24260 3.27300 3.28631 3.47263 4.19953 4.25317 4.50980 5.02628 5.11960 5.35070 5.55096 5.66341 5.72985 5.76551 6.03097 6.18060 6.35318 6.36706 6.46387 6.60197 6.87826 6.90526 6.99106 7.30286 7.65001 7.67542 7.95621 8.41857 8.66513 9.30822 10.78940 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.008426 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.811087 B = 3322.087512 C = 4430.638071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.115 3.885 10 H 0.067 0.933 11 C -0.107 4.107 12 C -0.024 4.024 13 C -0.108 4.108 14 N -0.425 5.425 15 C 0.182 3.818 16 C 0.062 3.938 17 C 0.006 3.994 18 N -0.486 5.486 19 C 0.172 3.828 20 O -0.190 6.190 21 O -0.149 6.149 22 C 0.070 3.930 23 H 0.267 0.733 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.195 0.805 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -3.655 5.645 6.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.096 3.904 10 H 0.084 0.916 11 C -0.145 4.145 12 C -0.062 4.062 13 C -0.231 4.231 14 N -0.158 5.158 15 C -0.018 4.018 16 C 0.008 3.992 17 C -0.136 4.136 18 N -0.215 5.215 19 C -0.053 4.053 20 O -0.075 6.075 21 O -0.032 6.032 22 C 0.013 3.987 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.212 0.788 29 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.934 -4.041 6.639 8.009 hybrid contribution 0.431 1.926 -0.794 2.128 sum -1.503 -2.115 5.845 6.394 Atomic orbital electron populations 1.69936 1.06165 1.27578 1.46272 1.25079 0.94888 0.99804 0.94084 0.86490 0.80044 0.82858 0.78266 1.20511 1.20879 1.19406 1.21110 0.93992 0.89596 1.51985 0.91250 1.18410 0.92774 0.94854 0.84357 0.91593 1.22525 0.99261 0.94769 0.97985 1.20381 0.96510 0.95871 0.93456 1.22332 1.08782 0.98886 0.93061 1.69745 1.10243 1.18429 1.17352 1.21238 1.05208 0.86681 0.88716 1.19053 1.01514 0.84413 0.94247 1.23232 0.99986 1.01517 0.88838 1.70381 1.16694 1.03161 1.31241 1.28129 0.98015 0.98162 0.81025 1.84576 1.53500 1.33104 1.36279 1.84588 1.54477 1.40562 1.23582 1.25976 0.88745 0.87788 0.96184 0.92313 0.90418 0.90744 0.91305 0.90800 0.78776 0.73061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.26 12.57 55.43 0.70 -23.57 15 2 C 0.07 1.80 5.27 -17.82 -0.09 1.71 15 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.53 -13.73 8.51 -34.44 -0.29 -14.03 15 8 H 0.07 1.73 7.62 -52.49 -0.40 1.33 15 9 C 0.11 2.71 2.74 -91.87 -0.25 2.45 15 10 H 0.07 1.64 8.14 -51.93 -0.42 1.21 15 11 C -0.11 -1.96 6.63 -25.20 -0.17 -2.12 15 12 C -0.02 -0.42 6.79 -26.80 -0.18 -0.60 15 13 C -0.11 -2.38 7.97 -82.49 -0.66 -3.03 15 14 N -0.42 -9.43 11.30 -7.93 -0.09 -9.52 15 15 C 0.18 4.14 8.16 -14.17 -0.12 4.03 15 16 C 0.06 1.20 7.30 -36.77 -0.27 0.93 15 17 C 0.01 0.10 11.84 -17.37 -0.21 -0.10 15 18 N -0.49 -7.39 11.26 -14.62 -0.16 -7.56 15 19 C 0.17 2.28 13.21 52.17 0.69 2.96 15 20 O -0.19 -3.37 10.80 4.05 0.04 -3.33 15 21 O -0.15 -3.89 10.54 3.05 0.03 -3.86 15 22 C 0.07 1.74 6.86 -35.42 -0.24 1.50 15 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.07 1.34 7.78 -51.92 -0.40 0.93 15 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.20 2.82 8.06 -52.49 -0.42 2.40 15 29 H 0.25 1.80 8.06 -52.48 -0.42 1.38 15 LS Contribution 265.00 15.07 3.99 3.99 Total: -1.00 -31.30 265.00 -4.77 -36.07 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -2.48 Total: -1.59 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.79 Total: -6.31 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.44 Total: -40.64 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.08 Total: -7.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.30 -4.77 -36.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.120 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds