Wall clock time and date at job start Mon Mar 30 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99884 * 2 1 4 4 H 1.48504 * 109.46951 * 85.09855 * 3 2 1 5 5 H 1.48494 * 109.47373 * 325.09624 * 3 2 1 6 6 H 1.48494 * 109.47081 * 205.09415 * 3 2 1 7 7 C 1.37874 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00552 * 172.85406 * 7 2 1 9 9 C 1.50697 * 119.99900 * 352.85715 * 7 2 1 10 10 H 1.08993 * 110.31318 * 58.49754 * 9 7 2 11 11 C 1.54474 * 110.34817 * 180.79540 * 9 7 2 12 12 C 1.54452 * 101.87984 * 144.39883 * 11 9 7 13 13 C 1.51360 * 104.97000 * 334.45630 * 12 11 9 14 14 N 1.34511 * 141.83698 * 196.86060 * 13 12 11 15 15 C 1.31402 * 108.65689 * 179.97438 * 14 13 12 16 16 C 1.47039 * 125.76176 * 179.97438 * 15 14 13 17 17 C 1.36145 * 126.61549 * 359.97438 * 16 15 14 18 18 N 1.33972 * 107.47953 * 179.97438 * 17 16 15 19 19 C 1.30441 * 108.95740 * 359.97438 * 18 17 16 20 20 O 1.33939 * 109.10843 * 359.73327 * 19 18 17 21 21 O 1.34471 * 108.48592 * 359.97438 * 15 14 13 22 22 C 1.34283 * 110.36272 * 16.85468 * 13 12 11 23 23 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 24 24 H 1.09007 * 110.94557 * 262.55082 * 11 9 7 25 25 H 1.09007 * 110.94859 * 26.24995 * 11 9 7 26 26 H 1.09002 * 110.34816 * 215.57911 * 12 11 9 27 27 H 1.09000 * 110.42910 * 93.37185 * 12 11 9 28 28 H 1.07996 * 126.26217 * 359.97438 * 17 16 15 29 29 H 1.08007 * 125.44320 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3930 2.1063 1.3950 5 1 1.5023 2.6206 -0.8011 6 1 3.5946 1.4126 -0.5938 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1976 -0.1169 9 6 1.2598 -2.4941 0.1612 10 1 0.5183 -2.6063 -0.6297 11 6 2.2459 -3.6831 0.1484 12 6 1.5944 -4.6474 1.1639 13 6 0.7812 -3.7589 2.0806 14 7 0.1707 -3.7525 3.2791 15 6 -0.3830 -2.5751 3.4626 16 6 -1.1475 -2.1603 4.6482 17 6 -1.4117 -2.9161 5.7493 18 7 -2.1327 -2.1630 6.5907 19 6 -2.3183 -0.9883 6.0550 20 8 -1.7175 -0.9521 4.8585 21 8 -0.1327 -1.8133 2.3831 22 6 0.5945 -2.5538 1.5184 23 1 -0.4850 0.8400 0.0004 24 1 2.2972 -4.1362 -0.8417 25 1 3.2351 -3.3727 0.4850 26 1 2.3611 -5.1757 1.7306 27 1 0.9457 -5.3580 0.6517 28 1 -1.0976 -3.9361 5.9144 29 1 -2.8654 -0.1736 6.5061 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:50 Heat of formation + Delta-G solvation = 38.190208 kcal Electronic energy + Delta-G solvation = -17258.004333 eV Core-core repulsion = 14342.314327 eV Total energy + Delta-G solvation = -2915.690006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.56687 -44.09434 -38.25653 -36.08404 -35.54689 -34.35243 -32.20800 -29.66515 -28.64632 -25.86598 -24.94740 -23.87880 -22.43674 -21.63758 -21.38475 -19.07249 -18.76687 -18.11203 -17.57481 -17.18411 -16.67606 -16.17449 -15.50211 -15.31410 -14.84903 -14.46922 -14.13445 -13.78329 -13.15523 -13.01743 -12.81999 -12.62086 -12.43270 -12.31491 -11.97267 -11.91762 -11.82718 -11.38858 -11.22666 -10.69147 -10.55244 -8.95245 -8.28083 -6.41417 -0.36097 0.95969 1.16498 1.34419 1.37133 1.46782 1.48967 1.62233 1.84775 2.33864 2.94361 3.06777 3.26349 3.78270 3.83456 4.06451 4.25672 4.39335 4.49198 4.61127 4.64150 4.90152 4.95598 5.06590 5.19773 5.23026 5.31419 5.42366 5.55950 5.66718 6.05326 6.41437 6.68872 6.71459 7.29207 8.79034 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.008426 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.811087 B = 3322.087512 C = 4430.638071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.016 3.984 3 Si 0.954 3.046 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.105 3.895 10 H 0.040 0.960 11 C -0.094 4.094 12 C -0.018 4.018 13 C -0.098 4.098 14 N -0.436 5.436 15 C 0.187 3.813 16 C 0.005 3.995 17 C 0.041 3.959 18 N -0.506 5.506 19 C 0.212 3.788 20 O -0.213 6.213 21 O -0.186 6.186 22 C 0.013 3.987 23 H 0.263 0.737 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.211 0.789 29 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -4.249 6.972 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.578 4.578 8 H 0.093 0.907 9 C 0.086 3.914 10 H 0.057 0.943 11 C -0.132 4.132 12 C -0.055 4.055 13 C -0.220 4.220 14 N -0.168 5.168 15 C -0.014 4.014 16 C -0.049 4.049 17 C -0.101 4.101 18 N -0.234 5.234 19 C -0.013 4.013 20 O -0.099 6.099 21 O -0.071 6.071 22 C -0.042 4.042 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.228 0.772 29 H 0.326 0.674 Dipole moment (debyes) X Y Z Total from point charges -1.495 -4.675 7.950 9.343 hybrid contribution 0.152 2.143 -1.009 2.373 sum -1.343 -2.532 6.941 7.510 Atomic orbital electron populations 1.70072 1.07603 1.27775 1.48399 1.25860 0.95536 1.03049 0.94103 0.85596 0.79583 0.79261 0.77692 1.21330 1.20581 1.17742 1.21546 0.94421 0.90923 1.50925 0.90735 1.18492 0.93103 0.96244 0.83569 0.94265 1.22503 0.97803 0.92739 1.00109 1.20570 0.96974 0.95365 0.92622 1.23137 1.07408 0.98841 0.92642 1.69800 1.11236 1.18205 1.17558 1.22072 1.04254 0.86486 0.88631 1.19032 1.05070 0.86065 0.94721 1.23546 0.97423 1.01717 0.87392 1.70501 1.17688 1.03997 1.31176 1.29606 0.94347 0.98596 0.78708 1.84580 1.54206 1.32920 1.38202 1.84510 1.55458 1.42208 1.24919 1.26055 0.91612 0.89280 0.97266 0.92846 0.87264 0.90440 0.88457 0.88283 0.77184 0.67360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.82 12.57 21.45 0.27 -52.55 15 2 C 0.02 0.90 5.27 84.65 0.45 1.34 15 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 15 4 H -0.29 -13.23 7.11 99.48 0.71 -12.53 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 6 H -0.25 -10.73 7.11 99.48 0.71 -10.02 15 7 C -0.54 -28.59 8.51 25.60 0.22 -28.37 15 8 H 0.07 3.73 7.62 -2.91 -0.02 3.71 15 9 C 0.10 5.05 2.74 -11.61 -0.03 5.02 15 10 H 0.04 2.05 8.14 -2.39 -0.02 2.03 15 11 C -0.09 -3.27 6.63 31.59 0.21 -3.06 15 12 C -0.02 -0.58 6.79 30.55 0.21 -0.37 15 13 C -0.10 -4.32 7.97 41.45 0.33 -3.99 15 14 N -0.44 -19.37 11.30 -292.96 -3.31 -22.68 15 15 C 0.19 8.69 8.16 87.07 0.71 9.40 15 16 C 0.00 0.18 7.30 24.09 0.18 0.35 15 17 C 0.04 1.28 11.84 83.88 0.99 2.28 15 18 N -0.51 -13.99 11.26 -314.90 -3.55 -17.54 15 19 C 0.21 4.94 13.21 130.45 1.72 6.67 15 20 O -0.21 -7.39 10.80 -8.41 -0.09 -7.48 15 21 O -0.19 -10.15 10.54 -11.99 -0.13 -10.28 15 22 C 0.01 0.69 6.86 24.96 0.17 0.86 15 23 H 0.26 14.79 8.31 -92.71 -0.77 14.02 15 24 H 0.11 3.08 8.14 -2.38 -0.02 3.06 15 25 H 0.08 2.64 7.78 -2.38 -0.02 2.62 15 26 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 27 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 28 H 0.21 5.72 8.06 -2.91 -0.02 5.69 15 29 H 0.31 2.82 8.06 -2.91 -0.02 2.79 15 Total: -1.00 -71.66 265.00 1.56 -70.10 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.18 Total: 5.05 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.15 Total: -9.87 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -6.59 Total: -92.78 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.22 Total: -17.75 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.66 1.56 -70.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.289 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds