Wall clock time and date at job start Mon Mar 30 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38865 * 120.93921 * 2 1 4 4 N 1.32036 * 120.19256 * 179.97438 * 3 2 1 5 5 N 1.28356 * 122.36121 * 0.02562 * 4 3 2 6 6 C 1.33252 * 121.93883 * 0.02562 * 5 4 3 7 7 C 1.46984 * 120.23604 * 180.02562 * 6 5 4 8 8 S 1.75667 * 125.23340 * 179.69444 * 7 6 5 9 9 C 1.75475 * 92.09202 * 179.91773 * 8 7 6 10 10 C 1.32475 * 111.38035 * 0.35581 * 9 8 7 11 11 C 1.39368 * 125.23061 * 0.02562 * 7 6 5 12 12 C 1.40564 * 123.72470 * 0.03655 * 11 7 6 13 13 H 1.07996 * 120.00326 * 335.93041 * 12 11 7 14 14 C 1.39946 * 119.99712 * 155.93879 * 12 11 7 15 15 N 1.30896 * 120.00550 * 350.30060 * 14 12 11 16 16 Si 1.86811 * 119.99955 * 170.29573 * 14 12 11 17 17 H 1.48496 * 109.46650 * 94.80817 * 16 14 12 18 18 H 1.48495 * 109.47261 * 214.80616 * 16 14 12 19 19 H 1.48500 * 109.46946 * 334.81160 * 16 14 12 20 20 C 1.38463 * 120.93515 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.46489 * 270.02056 * 1 2 3 22 22 H 1.08997 * 109.46846 * 30.01571 * 1 2 3 23 23 H 1.08993 * 109.47122 * 150.01919 * 1 2 3 24 24 H 1.07997 * 119.90715 * 359.97438 * 3 2 1 25 25 H 1.07994 * 124.30758 * 180.09079 * 9 8 7 26 26 H 1.08002 * 122.78266 * 179.73264 * 10 9 8 27 27 H 0.96997 * 120.00368 * 180.02562 * 15 14 12 28 28 H 1.07998 * 121.07146 * 0.04146 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2210 1.1911 0.0000 4 7 3.5412 1.1739 0.0005 5 7 4.2141 0.0808 0.0005 6 6 3.6206 -1.1123 -0.0005 7 6 4.4280 -2.3405 0.0002 8 16 3.7856 -3.9755 0.0067 9 6 5.3943 -4.6764 0.0007 10 6 6.3298 -3.7384 0.0021 11 6 5.8209 -2.3871 0.0023 12 6 6.6399 -1.2447 0.0049 13 1 6.2611 -0.3078 -0.3761 14 6 7.9462 -1.3215 0.5010 15 7 8.3441 -2.3961 1.1337 16 14 9.1224 0.1098 0.2602 17 1 9.0917 0.9830 1.4609 18 1 10.4993 -0.4092 0.0607 19 1 8.7110 0.8933 -0.9323 20 6 2.2188 -1.1877 0.0005 21 1 -0.3632 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 1.6949 2.1342 -0.0004 25 1 5.5960 -5.7374 0.0007 26 1 7.3856 -3.9655 0.0032 27 1 9.2494 -2.4491 1.4778 28 1 1.7119 -2.1413 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259701946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:26 Heat of formation + Delta-G solvation = 66.447818 kcal Electronic energy + Delta-G solvation = -14788.587547 eV Core-core repulsion = 12316.875754 eV Total energy + Delta-G solvation = -2471.711793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73421 -36.44063 -33.63375 -33.23651 -32.03273 -28.58156 -27.66259 -25.81573 -23.33243 -22.40930 -20.86117 -18.93864 -17.17038 -16.35211 -15.75777 -15.54738 -15.11945 -14.11164 -13.87026 -13.39378 -12.79744 -12.52950 -12.49394 -12.17152 -12.05965 -11.76371 -11.54844 -11.26616 -11.04454 -10.54089 -10.43312 -9.79257 -9.55187 -9.32837 -9.25696 -8.97336 -8.47486 -7.32477 -7.20658 -7.05855 -4.53466 1.55733 1.75734 2.71073 2.94276 2.96910 3.03106 3.06714 3.52923 3.77742 3.82645 4.64965 5.13835 5.16481 5.20916 5.31795 5.53991 5.71573 5.73830 5.95126 6.02379 6.11618 6.49260 6.63075 6.76867 6.88907 7.05043 7.17591 7.28638 7.48846 7.69564 8.30882 8.46116 8.58211 9.73319 9.92014 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.009421 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.375508 B = 2971.422677 C = 4260.810848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.083 4.083 3 C -0.044 4.044 4 N -0.233 5.233 5 N -0.272 5.272 6 C 0.210 3.790 7 C -0.347 4.347 8 S -0.036 6.036 9 C -0.209 4.209 10 C -0.097 4.097 11 C 0.120 3.880 12 C -0.349 4.349 13 H 0.123 0.877 14 C 0.062 3.938 15 N -0.769 5.769 16 Si 0.928 3.072 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.251 1.251 20 C -0.165 4.165 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.148 0.852 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.290 0.710 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 0.163 -1.220 5.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.210 4.210 4 N -0.074 5.074 5 N -0.120 5.120 6 C 0.074 3.926 7 C -0.465 4.465 8 S 0.219 5.781 9 C -0.343 4.343 10 C -0.129 4.129 11 C 0.108 3.892 12 C -0.379 4.379 13 H 0.141 0.859 14 C -0.160 4.160 15 N -0.392 5.392 16 Si 0.751 3.249 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.175 1.175 20 C -0.195 4.195 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.165 0.835 25 H 0.157 0.843 26 H 0.162 0.838 27 H 0.101 0.899 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.132 0.315 -1.084 5.254 hybrid contribution 0.509 0.061 0.123 0.528 sum -4.622 0.376 -0.961 4.736 Atomic orbital electron populations 1.20686 0.90693 1.02652 1.02260 1.20753 0.96931 0.93951 0.97638 1.23616 0.93066 0.97593 1.06752 1.72808 1.06589 1.21922 1.06066 1.73591 1.28600 0.93833 1.15993 1.20269 0.89657 0.92622 0.90086 1.21264 0.94266 0.90507 1.40502 1.82817 1.09330 1.00676 1.85284 1.24921 0.95949 1.01558 1.11846 1.21671 1.00132 0.92232 0.98882 1.18110 0.89827 0.92439 0.88787 1.20298 0.93755 0.98265 1.25610 0.85905 1.26455 0.99289 0.97780 0.92510 1.69789 1.19549 1.27280 1.22584 0.85930 0.77740 0.80345 0.80926 1.18772 1.19861 1.17464 1.22024 0.94561 0.98131 1.04766 0.91065 0.91391 0.91510 0.83495 0.84320 0.83763 0.89869 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.07 36.01 0.36 -0.97 15 2 C -0.08 -1.49 5.92 -104.30 -0.62 -2.11 15 3 C -0.04 -0.83 11.02 -17.23 -0.19 -1.02 15 4 N -0.23 -5.35 11.50 30.62 0.35 -5.00 15 5 N -0.27 -6.91 8.60 33.26 0.29 -6.62 15 6 C 0.21 5.13 6.81 -82.90 -0.56 4.57 15 7 C -0.35 -8.72 6.48 -35.62 -0.23 -8.95 15 8 S -0.04 -0.77 22.19 -107.50 -2.39 -3.15 15 9 C -0.21 -4.47 11.05 28.82 0.32 -4.15 15 10 C -0.10 -2.31 9.03 -39.08 -0.35 -2.66 15 11 C 0.12 3.10 5.67 -106.18 -0.60 2.50 15 12 C -0.35 -9.01 8.45 -38.07 -0.32 -9.33 15 13 H 0.12 3.28 5.80 -52.49 -0.30 2.98 15 14 C 0.06 1.47 5.39 -17.31 -0.09 1.37 15 15 N -0.77 -17.99 10.84 55.55 0.60 -17.38 15 16 Si 0.93 18.07 29.57 -169.99 -5.03 13.04 15 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 19 H -0.25 -4.97 7.11 56.52 0.40 -4.57 15 20 C -0.17 -3.42 9.45 -38.69 -0.37 -3.78 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.07 0.72 8.11 -51.93 -0.42 0.30 15 23 H 0.07 0.78 8.10 -51.93 -0.42 0.36 15 24 H 0.15 2.22 8.06 -52.49 -0.42 1.79 15 25 H 0.14 2.50 8.06 -52.49 -0.42 2.08 15 26 H 0.14 3.38 6.43 -52.49 -0.34 3.04 15 27 H 0.29 6.06 8.30 -40.82 -0.34 5.72 15 28 H 0.13 2.45 7.36 -52.49 -0.39 2.06 15 LS Contribution 261.73 15.07 3.94 3.94 Total: -1.00 -27.80 261.73 -7.16 -34.96 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.27 Total: 4.76 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.66 Total: -24.54 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 1.24 Total: -29.01 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.39 Total: -3.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.80 -7.16 -34.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.406 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds