Wall clock time and date at job start Mon Mar 30 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38865 * 120.93921 * 2 1 4 4 N 1.32036 * 120.19256 * 179.97438 * 3 2 1 5 5 N 1.28356 * 122.36121 * 0.02562 * 4 3 2 6 6 C 1.33252 * 121.93883 * 0.02562 * 5 4 3 7 7 C 1.46984 * 120.23604 * 180.02562 * 6 5 4 8 8 S 1.75667 * 125.23340 * 179.69444 * 7 6 5 9 9 C 1.75475 * 92.09202 * 179.91773 * 8 7 6 10 10 C 1.32475 * 111.38035 * 0.35581 * 9 8 7 11 11 C 1.39368 * 125.23061 * 0.02562 * 7 6 5 12 12 C 1.40564 * 123.72470 * 0.03655 * 11 7 6 13 13 H 1.07996 * 120.00326 * 335.93041 * 12 11 7 14 14 C 1.39946 * 119.99712 * 155.93879 * 12 11 7 15 15 N 1.30896 * 120.00550 * 350.30060 * 14 12 11 16 16 Si 1.86811 * 119.99955 * 170.29573 * 14 12 11 17 17 H 1.48496 * 109.46650 * 94.80817 * 16 14 12 18 18 H 1.48495 * 109.47261 * 214.80616 * 16 14 12 19 19 H 1.48500 * 109.46946 * 334.81160 * 16 14 12 20 20 C 1.38463 * 120.93515 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.46489 * 270.02056 * 1 2 3 22 22 H 1.08997 * 109.46846 * 30.01571 * 1 2 3 23 23 H 1.08993 * 109.47122 * 150.01919 * 1 2 3 24 24 H 1.07997 * 119.90715 * 359.97438 * 3 2 1 25 25 H 1.07994 * 124.30758 * 180.09079 * 9 8 7 26 26 H 1.08002 * 122.78266 * 179.73264 * 10 9 8 27 27 H 0.96997 * 120.00368 * 180.02562 * 15 14 12 28 28 H 1.07998 * 121.07146 * 0.04146 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2210 1.1911 0.0000 4 7 3.5412 1.1739 0.0005 5 7 4.2141 0.0808 0.0005 6 6 3.6206 -1.1123 -0.0005 7 6 4.4280 -2.3405 0.0002 8 16 3.7856 -3.9755 0.0067 9 6 5.3943 -4.6764 0.0007 10 6 6.3298 -3.7384 0.0021 11 6 5.8209 -2.3871 0.0023 12 6 6.6399 -1.2447 0.0049 13 1 6.2611 -0.3078 -0.3761 14 6 7.9462 -1.3215 0.5010 15 7 8.3441 -2.3961 1.1337 16 14 9.1224 0.1098 0.2602 17 1 9.0917 0.9830 1.4609 18 1 10.4993 -0.4092 0.0607 19 1 8.7110 0.8933 -0.9323 20 6 2.2188 -1.1877 0.0005 21 1 -0.3632 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 1.6949 2.1342 -0.0004 25 1 5.5960 -5.7374 0.0007 26 1 7.3856 -3.9655 0.0032 27 1 9.2494 -2.4491 1.4778 28 1 1.7119 -2.1413 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259701946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:26 Heat of formation + Delta-G solvation = 50.651449 kcal Electronic energy + Delta-G solvation = -14789.272529 eV Core-core repulsion = 12316.875754 eV Total energy + Delta-G solvation = -2472.396775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39637 -38.19716 -35.10468 -34.98146 -33.73309 -30.33339 -29.04597 -27.50181 -24.97999 -24.06595 -22.52054 -20.69512 -18.91691 -17.99627 -17.36979 -17.22420 -16.77862 -15.69543 -15.51012 -14.93823 -14.21003 -14.00507 -13.95562 -13.73901 -13.43491 -13.32801 -13.16222 -12.88571 -12.71083 -12.28138 -12.02985 -11.49503 -11.23778 -11.06593 -11.01044 -10.46761 -10.14476 -9.10035 -8.94035 -8.79453 -6.36518 -0.12802 0.16527 1.01803 1.31573 1.34529 1.36319 1.50422 1.74214 2.08135 2.17879 2.95042 3.33022 3.66827 3.79785 3.94653 4.02678 4.25166 4.37781 4.68928 4.80518 4.87677 4.99276 5.09918 5.14999 5.30789 5.37683 5.44169 5.58319 5.75918 5.92875 6.46591 6.62510 6.78480 8.05579 8.23197 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.009421 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.375508 B = 2971.422677 C = 4260.810848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.069 4.069 3 C -0.029 4.029 4 N -0.271 5.271 5 N -0.313 5.313 6 C 0.184 3.816 7 C -0.386 4.386 8 S 0.008 5.992 9 C -0.198 4.198 10 C -0.125 4.125 11 C 0.094 3.906 12 C -0.392 4.392 13 H 0.102 0.898 14 C 0.033 3.967 15 N -0.792 5.792 16 Si 0.988 3.012 17 H -0.265 1.265 18 H -0.251 1.251 19 H -0.263 1.263 20 C -0.175 4.175 21 H 0.092 0.908 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.193 0.807 25 H 0.176 0.824 26 H 0.141 0.859 27 H 0.300 0.700 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 0.336 -1.184 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.197 4.197 4 N -0.110 5.110 5 N -0.159 5.159 6 C 0.046 3.954 7 C -0.504 4.504 8 S 0.263 5.737 9 C -0.332 4.332 10 C -0.157 4.157 11 C 0.083 3.917 12 C -0.423 4.423 13 H 0.120 0.880 14 C -0.187 4.187 15 N -0.416 5.416 16 Si 0.808 3.192 17 H -0.190 1.190 18 H -0.174 1.174 19 H -0.187 1.187 20 C -0.204 4.204 21 H 0.110 0.890 22 H 0.115 0.885 23 H 0.098 0.902 24 H 0.210 0.790 25 H 0.193 0.807 26 H 0.158 0.842 27 H 0.112 0.888 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.322 0.480 -1.047 7.412 hybrid contribution 0.842 0.081 0.107 0.853 sum -6.479 0.561 -0.940 6.571 Atomic orbital electron populations 1.20835 0.86064 1.04807 1.04155 1.21377 0.99950 0.92246 0.94301 1.24440 0.92032 1.00091 1.03152 1.72730 1.08852 1.21496 1.07953 1.73538 1.30231 0.94666 1.17464 1.20578 0.91509 0.92365 0.90984 1.21787 0.94839 0.92706 1.41059 1.82407 1.08732 0.98174 1.84365 1.25371 0.95531 1.03037 1.09252 1.21608 1.00505 0.92015 1.01545 1.18514 0.90653 0.93534 0.89044 1.20252 0.95542 0.97815 1.28647 0.88007 1.27063 0.99772 1.00068 0.91821 1.69775 1.20425 1.28374 1.23002 0.85078 0.76789 0.77352 0.79968 1.18970 1.17413 1.18666 1.22264 0.93241 1.00120 1.04807 0.88974 0.88545 0.90171 0.79025 0.80651 0.84170 0.88823 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.07 71.24 0.72 -1.31 15 2 C -0.07 -2.25 5.92 -19.66 -0.12 -2.37 15 3 C -0.03 -1.03 11.02 84.81 0.94 -0.10 15 4 N -0.27 -12.52 11.50 -57.04 -0.66 -13.18 15 5 N -0.31 -16.45 8.60 -48.70 -0.42 -16.87 15 6 C 0.18 9.18 6.81 41.74 0.28 9.47 15 7 C -0.39 -19.92 6.48 24.84 0.16 -19.75 15 8 S 0.01 0.34 22.19 -56.49 -1.25 -0.91 15 9 C -0.20 -8.34 11.05 66.69 0.74 -7.61 15 10 C -0.12 -6.07 9.03 22.71 0.21 -5.87 15 11 C 0.09 5.09 5.67 -20.87 -0.12 4.97 15 12 C -0.39 -21.47 8.45 23.25 0.20 -21.27 15 13 H 0.10 5.87 5.80 -2.91 -0.02 5.85 15 14 C 0.03 1.61 5.39 85.25 0.46 2.06 15 15 N -0.79 -38.24 10.84 21.83 0.24 -38.00 15 16 Si 0.99 38.39 29.57 68.60 2.03 40.42 15 17 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 18 H -0.25 -8.68 7.11 99.48 0.71 -7.98 15 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 20 C -0.18 -7.03 9.45 22.85 0.22 -6.81 15 21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.10 1.45 8.11 -2.39 -0.02 1.44 15 23 H 0.08 1.46 8.10 -2.39 -0.02 1.44 15 24 H 0.19 4.90 8.06 -2.91 -0.02 4.88 15 25 H 0.18 5.91 8.06 -2.91 -0.02 5.89 15 26 H 0.14 6.81 6.43 -2.91 -0.02 6.79 15 27 H 0.30 12.78 8.30 -92.71 -0.77 12.01 15 28 H 0.14 5.17 7.36 -2.91 -0.02 5.15 15 Total: -1.00 -64.25 261.73 4.80 -59.44 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.19 Total: 17.70 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 3.68 Total: -48.59 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.84 Total: -68.05 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.25 Total: -0.91 kcal Total: -64.25 4.80 -59.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.096 kcal (2) G-P(sol) polarization free energy of solvation -64.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds