Wall clock time and date at job start Mon Mar 30 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31116 * 123.06056 * 2 1 4 4 C 1.29275 * 117.46105 * 179.97438 * 3 2 1 5 5 S 1.70925 * 110.62941 * 359.73891 * 4 3 2 6 6 C 1.36823 * 123.06527 * 179.97438 * 2 1 3 7 7 C 1.46968 * 126.17847 * 0.02562 * 6 2 1 8 8 C 1.40117 * 121.33140 * 311.86308 * 7 6 2 9 9 C 1.37671 * 119.15817 * 180.23643 * 8 7 6 10 10 N 1.32195 * 122.17461 * 359.75674 * 9 8 7 11 11 C 1.31227 * 123.06072 * 359.97438 * 10 9 8 12 12 C 1.40945 * 120.39452 * 359.97438 * 11 10 9 13 13 C 1.40720 * 121.06482 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00077 * 150.20149 * 13 12 11 15 15 C 1.40025 * 120.00060 * 330.20374 * 13 12 11 16 16 N 1.30810 * 119.99871 * 334.71668 * 15 13 12 17 17 Si 1.86801 * 119.99970 * 154.72009 * 15 13 12 18 18 H 1.48502 * 109.46867 * 269.99727 * 17 15 13 19 19 H 1.48497 * 109.47230 * 30.00054 * 17 15 13 20 20 H 1.48501 * 109.46655 * 150.00071 * 17 15 13 21 21 H 1.08996 * 109.47292 * 272.70955 * 1 2 3 22 22 H 1.09000 * 109.47146 * 32.71337 * 1 2 3 23 23 H 1.08999 * 109.46790 * 152.70870 * 1 2 3 24 24 H 1.08001 * 124.69173 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.42570 * 359.97438 * 8 7 6 26 26 H 1.08004 * 118.91668 * 179.77766 * 9 8 7 27 27 H 1.08001 * 119.80814 * 179.97438 * 11 10 9 28 28 H 0.97008 * 120.00026 * 354.24415 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2223 1.0989 0.0000 4 6 3.5089 0.9727 0.0005 5 16 3.9521 -0.6780 0.0084 6 6 2.2535 -1.1466 0.0005 7 6 1.7327 -2.5209 0.0006 8 6 0.7272 -2.9190 0.8916 9 6 0.2757 -4.2191 0.8562 10 7 0.7562 -5.1081 0.0040 11 6 1.6937 -4.8278 -0.8704 12 6 2.2409 -3.5306 -0.9381 13 6 3.2470 -3.2146 -1.8698 14 1 3.3265 -2.2102 -2.2589 15 6 4.1450 -4.2023 -2.2925 16 7 4.3968 -5.2298 -1.5232 17 14 4.9834 -4.0526 -3.9551 18 1 4.1514 -4.7167 -4.9905 19 1 5.1489 -2.6174 -4.2986 20 1 6.3162 -4.7048 -3.8978 21 1 -0.3633 0.0486 1.0265 22 1 -0.3633 0.8647 -0.5554 23 1 -0.3633 -0.9133 -0.4712 24 1 4.2073 1.7965 0.0010 25 1 0.3146 -2.2160 1.6002 26 1 -0.4968 -4.5227 1.5472 27 1 2.0482 -5.5955 -1.5423 28 1 4.0276 -5.2667 -0.6269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259704609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:43 Heat of formation + Delta-G solvation = 50.882510 kcal Electronic energy + Delta-G solvation = -15068.806439 eV Core-core repulsion = 12596.419683 eV Total energy + Delta-G solvation = -2472.386755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21471 -38.17984 -34.52430 -32.68899 -30.17851 -29.69419 -27.01778 -25.50065 -24.21929 -21.83622 -21.56030 -18.60821 -18.00000 -17.37434 -15.75080 -15.24085 -14.74737 -14.29495 -14.18341 -13.78284 -12.99032 -12.87474 -12.58868 -12.23156 -12.06488 -11.95263 -11.80332 -11.36848 -11.04191 -10.68817 -10.59853 -10.19276 -9.47795 -9.20712 -8.89289 -8.37983 -8.27709 -7.96356 -7.77460 -7.49608 -4.79649 1.12795 1.94855 2.39311 2.45397 2.77047 3.01369 3.10630 3.20348 3.40804 3.77482 4.32593 4.77388 5.21175 5.55557 5.67613 5.75753 5.78148 5.95055 6.03483 6.22766 6.27940 6.43479 6.56010 6.80576 6.84556 7.23243 7.31134 7.36604 7.59783 7.78754 8.25808 8.31145 8.36934 9.40395 9.65594 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.011276 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.056070 B = 2482.472693 C = 3579.173177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.017 3.983 3 N -0.464 5.464 4 C -0.044 4.044 5 S 0.142 5.858 6 C -0.097 4.097 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.060 4.060 10 N -0.458 5.458 11 C 0.006 3.994 12 C 0.064 3.936 13 C -0.476 4.476 14 H 0.087 0.913 15 C 0.039 3.961 16 N -0.767 5.767 17 Si 1.067 2.933 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.271 1.271 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.186 0.814 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.138 0.862 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 6.123 0.374 6.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.117 4.117 3 N -0.178 5.178 4 C -0.339 4.339 5 S 0.400 5.600 6 C -0.218 4.218 7 C -0.155 4.155 8 C -0.110 4.110 9 C -0.211 4.211 10 N -0.166 5.166 11 C -0.161 4.161 12 C 0.058 3.942 13 C -0.505 4.505 14 H 0.105 0.895 15 C -0.186 4.186 16 N -0.388 5.388 17 Si 0.889 3.111 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.196 1.196 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.203 0.797 25 H 0.123 0.877 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.024 4.633 -0.503 5.081 hybrid contribution -1.534 1.774 1.129 2.602 sum 0.490 6.406 0.625 6.455 Atomic orbital electron populations 1.20182 0.87701 1.02644 1.01775 1.20731 0.97555 0.85772 1.07613 1.65784 1.05183 1.32148 1.14707 1.28030 0.95161 1.00928 1.09774 1.84114 1.08773 1.00989 1.66082 1.24258 0.94178 0.97235 1.06165 1.18852 1.04806 0.90669 1.01217 1.21579 0.95731 0.96617 0.97047 1.21367 1.05726 0.90277 1.03763 1.66686 1.09825 1.36940 1.03113 1.22664 0.97281 0.96080 1.00112 1.19621 0.92551 0.91778 0.90249 1.20619 1.10840 1.00070 1.18990 0.89504 1.27254 0.95491 0.90869 1.05022 1.70449 1.31897 1.27067 1.09415 0.83592 0.77085 0.77612 0.72855 1.19438 1.19620 1.19611 0.91784 0.91705 0.90774 0.79706 0.87743 0.86008 0.84503 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 9.24 36.01 0.33 -0.74 15 2 C 0.02 0.34 6.83 -83.41 -0.57 -0.23 15 3 N -0.46 -8.92 10.49 -11.27 -0.12 -9.04 15 4 C -0.04 -0.75 12.20 51.69 0.63 -0.12 15 5 S 0.14 2.67 21.74 -107.50 -2.34 0.34 15 6 C -0.10 -2.06 5.51 -36.56 -0.20 -2.26 15 7 C -0.15 -3.33 5.54 -102.14 -0.57 -3.89 15 8 C -0.09 -1.85 8.62 -39.08 -0.34 -2.19 15 9 C -0.06 -1.32 11.10 -17.60 -0.20 -1.52 15 10 N -0.46 -11.07 10.26 -12.75 -0.13 -11.20 15 11 C 0.01 0.15 9.25 -16.79 -0.16 -0.01 15 12 C 0.06 1.58 5.36 -104.42 -0.56 1.02 15 13 C -0.48 -11.37 7.71 -37.98 -0.29 -11.66 15 14 H 0.09 2.08 7.13 -52.48 -0.37 1.71 15 15 C 0.04 0.89 4.93 -17.32 -0.09 0.80 15 16 N -0.77 -18.51 12.50 55.55 0.69 -17.82 15 17 Si 1.07 19.68 30.00 -169.99 -5.10 14.58 15 18 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 19 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 20 H -0.27 -4.94 7.11 56.52 0.40 -4.53 15 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 1.30 7.06 -51.93 -0.37 0.93 15 24 H 0.19 2.41 8.06 -52.49 -0.42 1.99 15 25 H 0.10 1.95 7.65 -52.49 -0.40 1.55 15 26 H 0.12 2.33 8.06 -52.48 -0.42 1.91 15 27 H 0.14 3.42 6.88 -52.49 -0.36 3.06 15 28 H 0.30 7.59 6.90 -40.82 -0.28 7.31 15 LS Contribution 260.63 15.07 3.93 3.93 Total: -1.00 -26.49 260.63 -7.33 -33.82 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -2.27 Total: 6.20 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.00 Total: -20.80 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.45 Total: -38.06 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.10 Total: 14.58 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.34 Total: 0.34 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.49 -7.33 -33.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.703 kcal (2) G-P(sol) polarization free energy of solvation -26.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds