Wall clock time and date at job start Mon Mar 30 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31116 * 123.06056 * 2 1 4 4 C 1.29275 * 117.46105 * 179.97438 * 3 2 1 5 5 S 1.70925 * 110.62941 * 359.73891 * 4 3 2 6 6 C 1.36823 * 123.06527 * 179.97438 * 2 1 3 7 7 C 1.46968 * 126.17847 * 0.02562 * 6 2 1 8 8 C 1.40117 * 121.33140 * 311.86308 * 7 6 2 9 9 C 1.37671 * 119.15817 * 180.23643 * 8 7 6 10 10 N 1.32195 * 122.17461 * 359.75674 * 9 8 7 11 11 C 1.31227 * 123.06072 * 359.97438 * 10 9 8 12 12 C 1.40945 * 120.39452 * 359.97438 * 11 10 9 13 13 C 1.40720 * 121.06482 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00077 * 150.20149 * 13 12 11 15 15 C 1.40025 * 120.00060 * 330.20374 * 13 12 11 16 16 N 1.30810 * 119.99871 * 334.71668 * 15 13 12 17 17 Si 1.86801 * 119.99970 * 154.72009 * 15 13 12 18 18 H 1.48502 * 109.46867 * 269.99727 * 17 15 13 19 19 H 1.48497 * 109.47230 * 30.00054 * 17 15 13 20 20 H 1.48501 * 109.46655 * 150.00071 * 17 15 13 21 21 H 1.08996 * 109.47292 * 272.70955 * 1 2 3 22 22 H 1.09000 * 109.47146 * 32.71337 * 1 2 3 23 23 H 1.08999 * 109.46790 * 152.70870 * 1 2 3 24 24 H 1.08001 * 124.69173 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.42570 * 359.97438 * 8 7 6 26 26 H 1.08004 * 118.91668 * 179.77766 * 9 8 7 27 27 H 1.08001 * 119.80814 * 179.97438 * 11 10 9 28 28 H 0.97008 * 120.00026 * 354.24415 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2223 1.0989 0.0000 4 6 3.5089 0.9727 0.0005 5 16 3.9521 -0.6780 0.0084 6 6 2.2535 -1.1466 0.0005 7 6 1.7327 -2.5209 0.0006 8 6 0.7272 -2.9190 0.8916 9 6 0.2757 -4.2191 0.8562 10 7 0.7562 -5.1081 0.0040 11 6 1.6937 -4.8278 -0.8704 12 6 2.2409 -3.5306 -0.9381 13 6 3.2470 -3.2146 -1.8698 14 1 3.3265 -2.2102 -2.2589 15 6 4.1450 -4.2023 -2.2925 16 7 4.3968 -5.2298 -1.5232 17 14 4.9834 -4.0526 -3.9551 18 1 4.1514 -4.7167 -4.9905 19 1 5.1489 -2.6174 -4.2986 20 1 6.3162 -4.7048 -3.8978 21 1 -0.3633 0.0486 1.0265 22 1 -0.3633 0.8647 -0.5554 23 1 -0.3633 -0.9133 -0.4712 24 1 4.2073 1.7965 0.0010 25 1 0.3146 -2.2160 1.6002 26 1 -0.4968 -4.5227 1.5472 27 1 2.0482 -5.5955 -1.5423 28 1 4.0276 -5.2667 -0.6269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259704609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:43 Heat of formation + Delta-G solvation = 35.905540 kcal Electronic energy + Delta-G solvation = -15069.455889 eV Core-core repulsion = 12596.419683 eV Total energy + Delta-G solvation = -2473.036206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76837 -39.88565 -36.26860 -34.32040 -31.77569 -31.38002 -28.58386 -27.23960 -25.67239 -23.57575 -23.27558 -20.24282 -19.65091 -18.86977 -17.35272 -16.98168 -16.45755 -15.82231 -15.66070 -15.31748 -14.65779 -14.40720 -14.27341 -13.91286 -13.54560 -13.42349 -13.30531 -12.94736 -12.68928 -12.21800 -12.04266 -11.79208 -11.14935 -10.78126 -10.46667 -10.07537 -9.92471 -9.73359 -9.48610 -9.17950 -6.60736 -0.40200 0.42138 0.69198 0.86592 1.15882 1.50114 1.61856 1.77712 1.89620 2.25202 2.60606 3.40153 3.43762 3.95328 4.05682 4.19547 4.35538 4.41383 4.61794 4.72390 4.79649 4.85222 4.95921 5.06172 5.33780 5.46547 5.53732 5.60081 5.80583 6.00739 6.47868 6.61221 6.82707 7.59940 7.84403 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.011276 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.056070 B = 2482.472693 C = 3579.173177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.028 3.972 3 N -0.484 5.484 4 C -0.011 4.011 5 S 0.139 5.861 6 C -0.146 4.146 7 C -0.139 4.139 8 C -0.089 4.089 9 C -0.060 4.060 10 N -0.477 5.477 11 C -0.022 4.022 12 C 0.042 3.958 13 C -0.496 4.496 14 H 0.081 0.919 15 C 0.012 3.988 16 N -0.790 5.790 17 Si 1.110 2.890 18 H -0.262 1.262 19 H -0.257 1.257 20 H -0.267 1.267 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.231 0.769 25 H 0.134 0.866 26 H 0.153 0.847 27 H 0.121 0.879 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 8.450 0.622 8.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 N -0.198 5.198 4 C -0.306 4.306 5 S 0.397 5.603 6 C -0.267 4.267 7 C -0.150 4.150 8 C -0.111 4.111 9 C -0.213 4.213 10 N -0.185 5.185 11 C -0.186 4.186 12 C 0.036 3.964 13 C -0.524 4.524 14 H 0.099 0.901 15 C -0.208 4.208 16 N -0.411 5.411 17 Si 0.926 3.074 18 H -0.187 1.187 19 H -0.181 1.181 20 H -0.191 1.191 21 H 0.104 0.896 22 H 0.098 0.902 23 H 0.082 0.918 24 H 0.247 0.753 25 H 0.152 0.848 26 H 0.170 0.830 27 H 0.139 0.861 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.981 6.928 -0.270 7.210 hybrid contribution -1.593 1.277 1.206 2.371 sum 0.388 8.204 0.936 8.266 Atomic orbital electron populations 1.20267 0.86014 1.02787 1.03263 1.21187 0.98869 0.85443 1.05116 1.65918 1.05906 1.31594 1.16387 1.28853 0.95202 1.01083 1.05476 1.84143 1.07681 1.02407 1.66074 1.24243 0.95489 0.96873 1.10136 1.19183 1.04289 0.91280 1.00227 1.21873 0.95237 0.96911 0.97095 1.21952 1.05716 0.90414 1.03221 1.66665 1.10075 1.38017 1.03736 1.22442 0.98647 0.96315 1.01210 1.19879 0.93231 0.92210 0.91073 1.20596 1.11610 1.00069 1.20140 0.90072 1.28462 0.95286 0.89973 1.07090 1.70554 1.33277 1.28266 1.08960 0.83088 0.76436 0.78440 0.69417 1.18672 1.18106 1.19096 0.89647 0.90216 0.91800 0.75266 0.84775 0.82975 0.86121 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.99 9.24 71.24 0.66 -1.34 15 2 C 0.03 1.04 6.83 42.33 0.29 1.33 15 3 N -0.48 -16.99 10.49 -189.57 -1.99 -18.98 15 4 C -0.01 -0.33 12.20 130.62 1.59 1.26 15 5 S 0.14 4.99 21.74 -56.49 -1.23 3.76 15 6 C -0.15 -6.03 5.51 24.23 0.13 -5.89 15 7 C -0.14 -6.36 5.54 -18.26 -0.10 -6.47 15 8 C -0.09 -3.68 8.62 22.59 0.19 -3.48 15 9 C -0.06 -2.57 11.10 84.50 0.94 -1.63 15 10 N -0.48 -23.44 10.26 -194.25 -1.99 -25.43 15 11 C -0.02 -1.13 9.25 85.45 0.79 -0.34 15 12 C 0.04 2.12 5.36 -19.73 -0.11 2.02 15 13 C -0.50 -24.22 7.71 23.31 0.18 -24.04 15 14 H 0.08 3.95 7.13 -2.91 -0.02 3.93 15 15 C 0.01 0.54 4.93 85.28 0.42 0.96 15 16 N -0.79 -39.61 12.50 21.84 0.27 -39.33 15 17 Si 1.11 39.66 30.00 68.60 2.06 41.72 15 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 19 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 20 H -0.27 -9.24 7.11 99.48 0.71 -8.53 15 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 23 H 0.06 2.12 7.06 -2.39 -0.02 2.10 15 24 H 0.23 4.76 8.06 -2.91 -0.02 4.74 15 25 H 0.13 4.65 7.65 -2.91 -0.02 4.63 15 26 H 0.15 5.48 8.06 -2.91 -0.02 5.46 15 27 H 0.12 6.43 6.88 -2.91 -0.02 6.41 15 28 H 0.28 15.13 6.90 -92.70 -0.64 14.49 15 Total: -1.00 -57.69 260.63 3.43 -54.26 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.32 Total: 21.61 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 4.99 Total: -37.62 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.71 Total: -83.75 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.06 Total: 41.72 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.23 Total: 3.76 kcal Total: -57.69 3.43 -54.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.169 kcal (2) G-P(sol) polarization free energy of solvation -57.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds