Wall clock time and date at job start Mon Mar 30 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31815 * 119.11867 * 2 1 4 4 C 1.32322 * 120.81140 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.10952 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.80207 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47455 * 265.01820 * 6 5 4 8 8 H 1.08007 * 119.99451 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00662 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99726 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00415 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47084 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47386 * 119.99922 * 11 9 7 14 14 H 1.48501 * 109.47107 * 239.99378 * 11 9 7 15 15 C 1.38572 * 118.39630 * 359.97438 * 5 4 3 16 16 C 1.50701 * 120.44966 * 179.97438 * 15 5 4 17 17 F 1.39894 * 109.47478 * 185.02316 * 16 15 5 18 18 F 1.39901 * 109.47020 * 305.02562 * 16 15 5 19 19 F 1.39904 * 109.46811 * 65.01993 * 16 15 5 20 20 N 1.31781 * 119.12461 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47254 * 269.99889 * 1 2 3 22 22 H 1.09002 * 109.47745 * 30.00259 * 1 2 3 23 23 H 1.09000 * 109.47071 * 150.00226 * 1 2 3 24 24 H 1.08006 * 120.44227 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47412 * 25.01994 * 6 5 4 26 26 H 1.09002 * 109.47034 * 145.01672 * 6 5 4 27 27 H 0.96999 * 119.99677 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1516 0.0000 4 6 3.4710 1.1906 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 5.6878 0.0000 -0.0028 7 6 6.1891 -0.1228 -1.4186 8 1 5.4865 -0.1933 -2.2359 9 6 7.5443 -0.1451 -1.6707 10 7 8.3998 -0.0587 -0.6754 11 14 8.1656 -0.2965 -3.4258 12 1 7.0099 -0.3767 -4.3548 13 1 8.9910 0.8911 -3.7630 14 1 8.9901 -1.5249 -3.5548 15 6 3.4713 -1.1903 -0.0015 16 6 4.1961 -2.5115 -0.0033 17 9 3.2684 -3.5523 -0.1184 18 9 5.0828 -2.5555 -1.0845 19 9 4.9102 -2.6532 1.1915 20 7 2.1483 -1.1512 0.0005 21 1 -0.3634 0.0000 1.0277 22 1 -0.3635 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 3.9905 2.1376 -0.0009 25 1 6.0515 0.9310 0.4320 26 1 6.0516 -0.8423 0.5858 27 1 9.3533 -0.0740 -0.8528 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259705748.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:48 Heat of formation + Delta-G solvation = -127.687397 kcal Electronic energy + Delta-G solvation = -18173.953607 eV Core-core repulsion = 14709.213868 eV Total energy + Delta-G solvation = -3464.739739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.19336 -48.72859 -48.59614 -42.29527 -36.32620 -35.22283 -34.33378 -31.29055 -28.90670 -27.84519 -25.22098 -24.34604 -22.79113 -19.98219 -19.54696 -19.41910 -18.63085 -18.26560 -16.75526 -16.33855 -16.18197 -15.52663 -15.45061 -15.22730 -15.05998 -14.82670 -14.78772 -14.44570 -14.36251 -13.70019 -13.54483 -13.30490 -13.16187 -13.03312 -12.66318 -12.40804 -12.08370 -11.69007 -11.59098 -10.68655 -10.45764 -10.23227 -8.22574 -6.32307 -0.53012 -0.16341 1.37703 1.39470 1.42674 1.52973 2.34505 2.37495 2.46491 2.78995 2.98003 3.11748 3.32482 3.38662 3.64073 3.88463 4.28554 4.42146 4.74061 4.79855 4.96781 5.24294 5.32972 5.36483 5.63454 5.70841 6.03955 6.73966 6.80365 7.35135 8.87990 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.009136 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.173368 B = 3063.993311 C = 3593.426101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.286 3.714 3 N -0.497 5.497 4 C 0.159 3.841 5 C -0.113 4.113 6 C 0.053 3.947 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.019 3.981 10 N -0.921 5.921 11 Si 0.953 3.047 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.281 1.281 15 C 0.064 3.936 16 C 0.524 3.476 17 F -0.167 7.167 18 F -0.156 7.156 19 F -0.174 7.174 20 N -0.495 5.495 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.201 0.799 25 H 0.037 0.963 26 H 0.022 0.978 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 -0.277 1.396 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.019 3.981 3 N -0.211 5.211 4 C -0.009 4.009 5 C -0.118 4.118 6 C 0.015 3.985 7 C -0.553 4.553 8 H 0.069 0.931 9 C -0.180 4.180 10 N -0.560 5.560 11 Si 0.779 3.221 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.207 1.207 15 C -0.082 4.082 16 C 0.469 3.531 17 F -0.149 7.149 18 F -0.138 7.138 19 F -0.155 7.155 20 N -0.209 5.209 21 H 0.122 0.878 22 H 0.121 0.879 23 H 0.113 0.887 24 H 0.218 0.782 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.693 -0.334 1.437 12.778 hybrid contribution 1.933 -0.469 -0.702 2.110 sum -10.760 -0.802 0.735 10.815 Atomic orbital electron populations 1.20699 0.81735 1.05416 1.05402 1.24124 1.00036 0.82071 0.91893 1.68371 1.09839 1.30371 1.12482 1.23629 0.88972 0.98688 0.89660 1.22028 1.01058 0.93894 0.94787 1.18269 0.83651 0.98856 0.97753 1.21056 0.91721 1.50938 0.91582 0.93094 1.25647 0.96992 0.94545 1.00865 1.70039 1.02646 1.50652 1.32693 0.85566 0.78436 0.77941 0.80195 1.19323 1.19882 1.20658 1.21269 0.91682 0.93158 1.02130 1.17755 0.77105 0.83723 0.74543 1.93176 1.65596 1.60370 1.95712 1.93357 1.69091 1.96453 1.54851 1.93184 1.79318 1.96096 1.46909 1.67817 1.07131 1.32614 1.13342 0.87758 0.87856 0.88705 0.78242 0.94509 0.95952 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 10.32 71.23 0.74 -0.73 15 2 C 0.29 8.88 7.64 138.75 1.06 9.94 15 3 N -0.50 -16.09 10.34 -187.83 -1.94 -18.03 15 4 C 0.16 5.52 10.99 84.71 0.93 6.45 15 5 C -0.11 -4.65 5.08 -19.70 -0.10 -4.75 15 6 C 0.05 2.54 4.46 29.10 0.13 2.67 15 7 C -0.52 -27.12 7.15 25.60 0.18 -26.94 15 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 15 9 C 0.02 1.02 5.46 84.65 0.46 1.49 15 10 N -0.92 -52.20 13.29 21.45 0.28 -51.92 15 11 Si 0.95 42.80 29.54 68.60 2.03 44.82 15 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 15 C 0.06 2.60 6.29 42.56 0.27 2.87 15 16 C 0.52 21.59 2.83 71.24 0.20 21.79 15 17 F -0.17 -6.30 16.90 44.97 0.76 -5.54 15 18 F -0.16 -7.15 14.62 44.97 0.66 -6.50 15 19 F -0.17 -7.21 15.85 44.97 0.71 -6.49 15 20 N -0.49 -17.96 9.78 -176.03 -1.72 -19.68 15 21 H 0.10 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.20 5.86 8.06 -2.91 -0.02 5.84 15 25 H 0.04 1.80 8.07 -2.39 -0.02 1.78 15 26 H 0.02 1.17 6.16 -2.39 -0.01 1.16 15 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 15 Total: -1.00 -60.50 254.59 5.86 -54.64 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: 1.21 Total: -4.08 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 3.87 Total: 12.78 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -3.38 Total: -89.63 kcal Atomic # 9 Polarization: -20.66 SS G_CDS: 2.13 Total: -18.53 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -60.50 5.86 -54.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259705748.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.050 kcal (2) G-P(sol) polarization free energy of solvation -60.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds