Wall clock time and date at job start Mon Mar 30 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 120.00318 * 2 1 4 4 H 1.48497 * 109.47049 * 269.99879 * 3 2 1 5 5 H 1.48498 * 109.46865 * 29.99784 * 3 2 1 6 6 H 1.48493 * 109.47262 * 149.99766 * 3 2 1 7 7 C 1.40065 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.41592 * 120.00187 * 0.02562 * 7 2 1 10 10 N 1.33471 * 119.28305 * 359.97161 * 9 7 2 11 11 C 1.31888 * 120.68647 * 180.02562 * 10 9 7 12 12 C 1.39100 * 119.25756 * 359.74302 * 11 10 9 13 13 C 1.39063 * 118.67311 * 0.50473 * 12 11 10 14 14 C 1.50697 * 120.36919 * 179.77770 * 13 12 11 15 15 C 1.50702 * 109.47249 * 124.71893 * 14 13 12 16 16 C 1.33381 * 125.20592 * 89.99660 * 15 14 13 17 17 C 1.38427 * 114.92374 * 179.97438 * 16 15 14 18 18 C 1.33387 * 114.91991 * 0.25034 * 17 16 15 19 19 S 1.75886 * 109.59194 * 359.63459 * 18 17 16 20 20 N 1.31902 * 119.25795 * 359.49377 * 13 12 11 21 21 H 0.97002 * 119.99930 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.37091 * 180.02562 * 11 10 9 23 23 H 1.07993 * 120.66257 * 180.27324 * 12 11 10 24 24 H 1.08996 * 109.46926 * 4.71702 * 14 13 12 25 25 H 1.08996 * 109.46829 * 244.71938 * 14 13 12 26 26 H 1.08001 * 122.53741 * 359.97438 * 16 15 14 27 27 H 1.08002 * 122.53759 * 179.97438 * 17 16 15 28 28 H 1.08002 * 125.20431 * 179.75072 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6526 0.7000 6 1 3.5384 1.4401 0.7000 7 6 2.0071 -1.2130 0.0005 8 1 3.0872 -1.2131 0.0001 9 6 1.2992 -2.4392 0.0005 10 7 -0.0354 -2.4225 0.0006 11 6 -0.7227 -3.5482 0.0011 12 6 -0.0411 -4.7608 -0.0039 13 6 1.3494 -4.7447 0.0015 14 6 2.1263 -6.0360 0.0015 15 6 3.0832 -6.0465 -1.1627 16 6 4.3366 -5.5915 -1.1320 17 6 5.0281 -5.7059 -2.3257 18 6 4.3345 -6.2491 -3.3272 19 16 2.7181 -6.6613 -2.7697 20 7 1.9807 -3.5866 0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 -1.8024 -3.5287 0.0007 23 1 -0.5811 -5.6960 -0.0080 24 1 1.4363 -6.8750 -0.0876 25 1 2.6860 -6.1232 0.9327 26 1 4.7785 -5.1660 -0.2431 27 1 6.0503 -5.3761 -2.4388 28 1 4.7088 -6.4126 -4.3270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259738107.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:51 Heat of formation + Delta-G solvation = 73.093209 kcal Electronic energy + Delta-G solvation = -14650.540294 eV Core-core repulsion = 12179.116666 eV Total energy + Delta-G solvation = -2471.423627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.00773 -37.40642 -34.09489 -32.89282 -31.06945 -29.59473 -26.61768 -25.96240 -23.08142 -21.82560 -21.15937 -18.84499 -17.52167 -16.72154 -15.94005 -15.13492 -14.85599 -14.46841 -13.74729 -13.38105 -13.01351 -12.78214 -12.41603 -12.31143 -11.94952 -11.71507 -11.26698 -11.26088 -11.08568 -10.67951 -10.41931 -10.27360 -9.43208 -9.00687 -8.96466 -8.25617 -8.09653 -7.93256 -7.28943 -6.51773 -4.70191 1.38576 2.00290 2.36618 2.62025 2.88143 3.06271 3.09962 3.13822 3.20943 3.89743 4.65931 5.23716 5.37105 5.39541 5.59821 5.82759 5.95710 5.99158 5.99903 6.14740 6.39195 6.53619 6.57456 6.73804 6.85049 6.91933 7.08858 7.28741 7.67224 8.19789 8.53174 8.61833 9.13486 10.15235 10.31054 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.006917 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.829468 B = 4047.163109 C = 4753.456042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.401 4.401 8 H 0.091 0.909 9 C 0.393 3.607 10 N -0.509 5.509 11 C 0.155 3.845 12 C -0.370 4.370 13 C 0.186 3.814 14 C 0.006 3.994 15 C -0.138 4.138 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.228 4.228 19 S 0.075 5.925 20 N -0.579 5.579 21 H 0.274 0.726 22 H 0.128 0.872 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -8.280 -2.802 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.160 4.160 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.436 4.436 8 H 0.109 0.891 9 C 0.156 3.844 10 N -0.226 5.226 11 C -0.020 4.020 12 C -0.398 4.398 13 C 0.033 3.967 14 C -0.034 4.034 15 C -0.255 4.255 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.364 4.364 19 S 0.338 5.662 20 N -0.299 5.299 21 H 0.086 0.914 22 H 0.145 0.855 23 H 0.121 0.879 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.158 0.842 27 H 0.152 0.848 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.625 -7.823 -3.485 9.300 hybrid contribution 0.941 0.580 0.511 1.218 sum 4.566 -7.243 -2.974 9.064 Atomic orbital electron populations 1.70140 1.07281 1.28058 1.28009 1.26094 0.94999 1.01334 0.93554 0.86169 0.80379 0.80039 0.79344 1.19276 1.20025 1.18330 1.19337 0.94637 0.87604 1.42027 0.89069 1.19962 0.85773 0.90552 0.88145 1.69368 1.08470 1.26812 1.17952 1.22866 0.99181 0.88869 0.91039 1.21791 0.95258 0.98946 1.23845 1.20687 0.90580 0.93094 0.92376 1.18980 0.95132 0.94709 0.94595 1.24204 0.98152 1.05659 0.97506 1.20057 0.94042 1.02242 0.99514 1.20148 1.01183 1.01730 0.92708 1.25434 0.97347 1.10321 1.03272 1.84100 1.14122 1.62101 1.05887 1.68413 1.40824 0.97828 1.22860 0.91434 0.85458 0.87948 0.90206 0.89060 0.84234 0.84778 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.01 11.43 55.55 0.63 -18.37 15 2 C 0.07 1.71 5.50 -17.35 -0.10 1.62 15 3 Si 0.92 18.76 29.56 -169.99 -5.02 13.74 15 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 5 H -0.28 -5.45 7.11 56.52 0.40 -5.04 15 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.40 -11.13 9.38 -37.62 -0.35 -11.48 15 8 H 0.09 2.44 7.85 -52.48 -0.41 2.03 15 9 C 0.39 11.21 7.37 -158.30 -1.17 10.04 15 10 N -0.51 -14.29 7.88 -12.64 -0.10 -14.39 15 11 C 0.15 3.76 11.31 -17.21 -0.19 3.56 15 12 C -0.37 -8.27 9.83 -38.96 -0.38 -8.65 15 13 C 0.19 4.25 6.20 -82.26 -0.51 3.74 15 14 C 0.01 0.10 6.14 -29.04 -0.18 -0.07 15 15 C -0.14 -2.42 5.57 -36.00 -0.20 -2.62 15 16 C -0.13 -2.20 10.05 -41.21 -0.41 -2.61 15 17 C -0.13 -1.90 10.18 -41.21 -0.42 -2.32 15 18 C -0.23 -3.29 11.23 29.04 0.33 -2.97 15 19 S 0.08 1.19 23.33 -107.50 -2.51 -1.32 15 20 N -0.58 -15.21 10.06 -8.88 -0.09 -15.30 15 21 H 0.27 6.57 8.29 -40.82 -0.34 6.23 15 22 H 0.13 2.67 8.06 -52.49 -0.42 2.25 15 23 H 0.10 1.95 8.01 -52.49 -0.42 1.53 15 24 H 0.08 1.23 7.94 -51.93 -0.41 0.81 15 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.14 2.32 8.06 -52.49 -0.42 1.90 15 27 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 28 H 0.16 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 268.76 15.07 4.05 4.05 Total: -1.00 -30.65 268.76 -9.12 -39.77 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.49 Total: 3.59 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.59 Total: -11.77 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.45 Total: -48.06 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.65 -9.12 -39.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738107.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.865 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds